Array 1 444812-448022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNLA010000001.1 Serratia marcescens isolate 0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 444812 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 444872 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 444932 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 444992 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 445052 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 445112 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 445172 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 445232 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 445292 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 445352 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 445412 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 445472 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 445532 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 445592 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 445652 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 445712 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 445772 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 445832 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 445892 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 445952 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 446012 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 446072 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 446132 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 446193 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 446253 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 446313 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 446373 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 446433 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 446493 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 446552 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 446612 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 446672 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 446732 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 446792 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 446852 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 446912 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 446972 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 447032 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 447092 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 447152 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 447212 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 447272 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 447332 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 447392 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 447452 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 447512 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 447572 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 447632 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 447692 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 447752 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 447812 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 447872 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 447932 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 447992 28 96.4 0 ....................A....... | A,A,G [448012,448015,448018] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 456504-457610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNLA010000001.1 Serratia marcescens isolate 0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 456504 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 456564 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 456624 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 456684 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 456744 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 456804 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 456864 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 456924 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 456984 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 457044 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 457104 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 457164 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 457224 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 457284 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 457344 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 457404 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 457464 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 457524 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 457584 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //