Array 1 35-599 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHTC01000009.1 Neisseria sp. N177_16 NODE_9_length_62299_cov_59.9668_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 35 33 100.0 34 ................................. GATACAGGGTGTTTTTAATGCGCTCTACGCGGCC 102 33 97.0 34 ................................G TCATTCAAATCTGAATCTTCGTCATTCAAATCTG 169 33 97.0 35 ................................G AACGCACATGCGCTAAAGCGGTATGTTCGTCTAAA 237 33 100.0 34 ................................. AGAGCTGCTGGCGCAACGTAAGCAGAAGCATCGC 304 33 100.0 33 ................................. TTCTGTCCAGAAATGCCGCCCTGCTTTCGGCTA 370 33 97.0 33 ................................G AAGAGGAAAAAGTAACCAGACCGCCCAAAGGTG 436 33 100.0 32 ................................. AAATGAAACTCGAAGACGGCACCGAAGTAGAC 501 33 93.9 33 C...............................T TGTTTGAAAACGCAGTGGGTTAATCATTAAAGG 567 33 81.8 0 ..............A.A.......A.....GTT | ========== ====== ====== ====== ================================= =================================== ================== 9 33 96.3 34 TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GATGCGACCGCCGGTGATGATAACCGCCCTGCCGT # Right flank : TATCCAGTAACGGCGAAAAACCAAGCAGAATAAGTCAAGCACTCCCGATACCCCTAGAGGAATTAAATCCCTATTAAAAAGCCTCGTATCATGAGGCCTTTTTATTATCGAGTTAATCTAAGTTTGAACTAAGTTAAAGTATGCTAAAAAAATCATGCCGTCTGAACGTGATTTTGGTATATGATTTAGGAATGAATGCCATTTGATTTCAGGAGAAAAATCCATGTTCCAATTTGCCCATCCCCAACAAACTCCGCTGCGCCAAGCGGTGACTGAGGCTTATCGCCGCGATGAAGTCGAAGCGGTGAACGATATGCTGCAACAGGCGCAGATGACGGGTGAAGAGCGTCGTGCTGCCGATGATTTGGCGCGCCGTTTGGTGACGCAGGTGCGGGCGAGCCGTACCAAAGCCAGCGGTGTGGATGCGTTGATGCACGAGTTTTCATTGTCGAGCGAAGAGGGTGTGGCGTTAATGTGTTTGGCGGAGGCTTTGTTGCGCA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 667-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHTC01000012.1 Neisseria sp. N177_16 NODE_12_length_56115_cov_63.472_ID_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 666 33 97.0 32 ................................T TTAAATCCTCCTTTTTTGGCTAAATCGCGGAA 601 33 100.0 33 ................................. TAAAAACTGCTTTCAGGTGGCCTGGAACATGAT 535 33 100.0 32 ................................. AATTGCCCGATAACGGCTTCGAGTGTATCGGC 470 33 97.0 33 ................................T GTGTCCAGCGGTTCGCCATCGTAGGCGTCGATG 404 33 100.0 33 ................................. AAAACGACTAGGCTTGTGGTATCCAGTCCGTAA 338 33 97.0 33 ................................C ACTCGGAAACAGGGATAAACGGCGCAATCGGGT 272 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ================================= ================== 7 33 98.3 33 TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TTAATAGGGAAAAGATTAATGTTAATGCTGATTACTTACGATATTTCATTGGAGGATGCACAAGGCCAAGCCAGATTGCGGCGAATCGCCAAACACTGCCAAGATTACGGCGTGCGGGTGCAGTTTTCGGTATTTGAATGTGACATTGCCCCCGATCAATGGGTCGTGCTCAAAGACAAACTGCTCAAAACCTACAACCCCGAAACAGACAGCTTGCGCTTTTACCATTTGGGCAGCAAATGGCGCAGAAAAGTGGAACACCACGGCGCCAAACCGGCGGTGGATATTTTCCAAGACACATTGATTATTTAAATCGCTGACCATTGGTTCTCATGAAATCATCAGGGAGTTAGCGATTGAGAAATGTTCTTTAAAAATGAGGACTTATTTTCGGTGAATGCCTTTTGTAGGAGTGTGCTATAATTTTTTCGGTTCTCTTGGATAACGCTAGCGAATCAGTGCATTATCCGCCTTGATTGGCAAGGGTTGTATAAGGGGCT # Right flank : GTTTGGGAACGCTAGACGAAGTTATCTGTATGGCATCAGCCACCCCAACAGCTCATACTGCGCCCAGTCAAAGGCTCTGTCGTAGCCTGCGAGCTGCCAATACGGTGGGTCGGCATAGAAAAAAGTGTGTTCGCGGTCGTAACGTTTGAACACTTTTCCCACGGCTCGTTCTCGATGTAGACTCCGTTCAGCCGTTGCTGCGCGGCTTTCAGACGGCCTGCGATGTCGGCGGCGGTAAAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //