Array 1 8070-5724 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIE01000002.1 Listeria monocytogenes strain FSL L7-0647 NODE_2_length_507371_cov_21.350901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8069 36 100.0 30 .................................... GCAAAGAATTATTCTGTGTCAATGTGAATG 8003 36 100.0 30 .................................... ATCATTGTTCATAATTTAACATTACCTTTT 7937 36 100.0 30 .................................... AGTATCGTAATTTATAGCATCAAGTAAAGA 7871 36 100.0 30 .................................... CGTTGAGTTTGCAGGACAAACAAGTGAGAA 7805 36 100.0 30 .................................... TTTAACTTTCATTCGCTGCACGTATAAGGG 7739 36 100.0 30 .................................... GATCATAATAATCTAAAATTACGTGCGTAT 7673 36 100.0 30 .................................... GATTATGAAGTGATCGAGTCTTTAGCAAAA 7607 36 100.0 30 .................................... AGACTATAACGATAATTTAGTAAAACTAGC 7541 36 100.0 30 .................................... TGAAACACAATAGTAGATATGTTACATTCA 7475 36 100.0 30 .................................... TTACTGAATACTATGGAGATATCACTTATA 7409 36 100.0 30 .................................... TGTTGCTGATGCTAATAAAAAGTTAGAACT 7343 36 100.0 30 .................................... AGGTCAGTATACCTTTTGCACAAGGAAATA 7277 36 100.0 30 .................................... ATCGCCATTGACTTTCATTATCTCTACTGC 7211 36 100.0 30 .................................... ATCAATAGATTATATCTTTACTCTCGACTC 7145 36 100.0 30 .................................... TAGAACCATATCATAAATGCCAATCTAAGG 7079 36 100.0 30 .................................... AAATGGATTTTGTAATCTGCCAGTTTAACA 7013 36 100.0 30 .................................... TATTTCCGTGATTGTGTCACGATCTCGAAT 6947 36 100.0 30 .................................... TATACAATCCATTCGCCGGTGGTTCTGTTC 6881 36 100.0 30 .................................... CAGTTGATGAAGTTTTATAAATGCAAAGAG 6815 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6749 36 100.0 30 .................................... TATTAAATCTGCCAAACCCCATTTACTGCC 6683 36 100.0 30 .................................... TTTTCATATATGATAGATGACCCAGTCACT 6617 36 100.0 30 .................................... AATTGAATTCGCAAAACGATACTTGTATTT 6551 36 100.0 30 .................................... CAGTATCTACATGACTTTTACGCAGCCGCA 6485 36 100.0 30 .................................... TTTAAAATGCCATGGATTCATTTGTTGATT 6419 36 100.0 30 .................................... AACGACTAAATGTTGAGCGAATTATCTTAG 6353 36 100.0 30 .................................... AAGCCGGCAGAAACAGTAGCACAGATATTT 6287 36 100.0 30 .................................... TATCTATCATTTGCATATAATAGGCGAATT 6221 36 100.0 30 .................................... AGAACTCGCAGGAAGTTGAAGCGCTGGAAA 6155 36 100.0 30 .................................... ACTAAACCCTGAACCGCCCCTCATTGAAGA 6089 36 100.0 30 .................................... TAATTGCCGCAAAAGTAACCGAAGCCGAAT 6023 36 100.0 30 .................................... AATTAACTTCACACCTGCATCAATAATCTT 5957 36 100.0 30 .................................... TCCTCCAGCCCAACTCGTCTATTAGAGCTA 5891 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 5825 36 94.4 30 .........T................T......... GGGCTGGTTATTTTAGGCGGGGGAGCGCTT 5759 36 75.0 0 ............CA.....C.....A.C.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGTGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAAATTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGAGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 190523-190234 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIE01000005.1 Listeria monocytogenes strain FSL L7-0647 NODE_5_length_367377_cov_17.473624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 190522 29 100.0 36 ............................. AATTTTTCCAGATCCTACTTTAGCGGAAGTAATGGC 190457 29 100.0 36 ............................. TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 190392 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 190327 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 190261 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //