Array 1 2470668-2473459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009792.1 Yersinia pseudotuberculosis YPIII chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2470668 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 2470728 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 2470788 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 2470848 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 2470908 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 2470968 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 2471029 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 2471089 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 2471149 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 2471209 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 2471269 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 2471329 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 2471389 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 2471450 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 2471510 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 2471571 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 2471631 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 2471691 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 2471751 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 2471811 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 2471871 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 2471931 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 2471991 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 2472051 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 2472111 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 2472171 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 2472232 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 2472292 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 2472352 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 2472412 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 2472472 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 2472532 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 2472592 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 2472652 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 2472712 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 2472772 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 2472832 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 2472892 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 2472952 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 2473012 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 2473072 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 2473132 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 2473192 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 2473252 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 2473312 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 2473372 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 2473432 27 85.7 0 ...................-A.A.C... | T [2473456] ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3407426-3405597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009792.1 Yersinia pseudotuberculosis YPIII chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3407425 28 100.0 32 ............................ TATGTCGGATAGTAACATCGAGGGGTTCCGAT 3407365 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 3407305 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 3407245 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 3407185 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 3407125 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 3407065 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 3407004 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 3406944 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 3406884 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 3406823 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 3406763 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 3406704 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 3406644 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 3406584 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 3406524 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 3406464 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 3406404 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 3406344 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 3406284 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 3406224 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 3406164 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 3406104 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 3406044 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 3405984 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 3405924 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 3405864 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 3405804 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 3405744 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 3405684 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 3405624 27 85.7 0 .................C...CC.-... | T [3405599] ========== ====== ====== ====== ============================ ================================= ================== 31 28 97.6 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //