Array 1 227891-226395 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCG01000001.1 Salmonella enterica subsp. enterica serovar Isangi strain BCW_2703 NODE_1_length_667150_cov_5.44615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227890 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTACGCC 227829 29 100.0 32 ............................. CGACGCCGAATCCCCGTATCACTACCTGCGGA 227768 29 100.0 32 ............................. GCACGGGGTTGTCAGTTATCTGGCTCGATCCA 227707 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 227646 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 227585 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 227524 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 227463 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 227402 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 227341 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 227279 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 227217 29 100.0 32 ............................. TCGGCACCGCGCCAACATCGGCATAGGTCAGC 227156 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 227095 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 227034 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 226973 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 226912 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 226851 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 226790 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 226729 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 226668 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 226607 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 226546 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 226485 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 226424 29 93.1 0 A...........T................ | A [226397] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 245971-244174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCG01000001.1 Salmonella enterica subsp. enterica serovar Isangi strain BCW_2703 NODE_1_length_667150_cov_5.44615, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 245970 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 245909 29 100.0 32 ............................. CGACGACAGGTATTCTACAGGCTACCCAACGC 245848 29 100.0 32 ............................. TTCTGTCGCGCACCGGCGACGGCACGCCGCCG 245787 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 245726 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 245665 29 100.0 32 ............................. CGTTGCAACTGGAGATCTTGCCCTGTATTGAT 245604 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 245543 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 245482 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 245421 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 245360 29 100.0 32 ............................. ACGCGTTAGCCCGTCAGGAACGCTACTGGGAA 245299 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 245238 29 100.0 32 ............................. TCGTAAATCTGTTTCAGTGTTTTAGCGCGCAG 245177 29 100.0 32 ............................. CCACGCAAGCCAGTACCGCCAGTTTTACCAGC 245116 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 245055 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 244994 29 100.0 32 ............................. CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 244933 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 244872 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 244811 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 244750 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 244689 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 244628 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 244567 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 244506 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 244445 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 244384 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 244323 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 244262 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 244201 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //