Array 1 7765-6821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNK01000009.1 Escherichia coli strain MOD1-EC6920 MOD1-EC6920_9_length_153637_cov_63.9911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7764 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 7703 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 7642 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 7581 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 7520 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7459 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 7398 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7337 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7276 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7215 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 7154 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7093 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 7032 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 6971 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 6910 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 6849 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12373-11124 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNK01000041.1 Escherichia coli strain MOD1-EC6920 MOD1-EC6920_41_length_21055_cov_67.846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12372 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 12311 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 12250 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 12189 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 12128 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 12067 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 12006 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 11945 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 11884 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 11823 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 11762 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 11701 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 11640 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 11579 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 11518 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 11457 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 11396 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 11335 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 11274 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 11213 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 11152 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //