Array 1 85897-84457 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235848.1 [Clostridium] bolteae WAL-14578 supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 85896 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 85828 33 100.0 33 ................................. CTATATCCCTGCTTTATTTTGGGCGGCTCCGTC 85762 33 100.0 33 ................................. TCCCCGAACCGGATTACCTGGCTGTTAATCCCG 85696 33 100.0 35 ................................. ACTAAAGGAAATATGTTTAAGGTTGGGTACCATAT 85628 33 100.0 33 ................................. AAATACTCCACTGTGCGGTCCACATCCACGGAA 85562 33 100.0 32 ................................. TCAGTCCGGCACCCGGTTCATATGGCTGCAAA 85497 33 100.0 34 ................................. TCCGTTATTAGGTTATTTGTAGGTGTGTAACCGT 85430 33 100.0 33 ................................. ATTTGTAAGATAATCAACCAAATTTTGCGCAGA 85364 33 100.0 35 ................................. ACCGATAGCAGAGCCAGCCACATCAATATGTATAC 85296 33 100.0 33 ................................. AACGGTCTGTGTGCCAGCAGTTACAAAATCTGC 85230 33 100.0 33 ................................. ATCAGATGCTGCTTATCATTTTAAATCCATCAA 85164 33 100.0 36 ................................. GTCAATGTAATTTATCAATCCTGCTTCCCGCATATC 85095 33 100.0 33 ................................. CATGTTGATTATCAGATTATGAATCAACTGTAT 85029 33 100.0 35 ................................. GCCTATAGCAGAGCCAGCCACGTCCACATGAATAC 84961 33 100.0 33 ................................. ACGAAAACCACAATCATCACAACCGTGAATATA 84895 33 100.0 33 ................................. GTAAGGCCCGTGCTCTATGAGAAAATCAAAGAG 84829 33 100.0 35 ................................. ACCTTCCACCTGCGCATCCTTAAAAGCTGAATGCA 84761 33 100.0 36 ................................. GTAATGTCCTCCCCTAAAAGGGGTAACTGAATCAGC 84692 33 100.0 36 ................................. AACATAAGCATTTACGGCTGCGAGTATGTCTGCCCC 84623 33 100.0 34 ................................. CTATATGTCACGTTATCTCACCTCCGCTCATAGT 84556 33 100.0 34 ................................. GATATATAGTATAACAGACTAAAATGTATAAATC 84489 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.2 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : ATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGATCAACAGGGAATCCGTTAAGCGCATACCCCCCTCCGTAAAAAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACTGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 145459-144574 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ235849.1 [Clostridium] bolteae WAL-14578 supercont1.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 145458 33 100.0 35 ................................. ACTATCTGTCCAATCAAGCAGACACCGGTCATCCA 145390 33 100.0 33 ................................. CCCTCATAGCTCCCATTGAATAAGGGTCACATT 145324 33 100.0 34 ................................. CTTGAAATGCTCCAGCGCACGTCCTGCCAGGTCA 145257 33 100.0 36 ................................. CTTTTTAGGGAAAGTGAGAGGCAAAGGCGCTATATA 145188 33 100.0 35 ................................. AACAAAACTTGCACTGCAGGCAATGGTGGACCGTG 145120 33 100.0 34 ................................. AGCGCAGAGGCCGGAAAATCGTGAATGTGGAGTC 145053 33 100.0 35 ................................. TTCCAATATCTCATTACTTGCTGCCTCGGCCCCCG 144985 33 100.0 34 ................................. CCTATATTATCTGATGTATCAGGGGATAACAGTA 144918 33 100.0 33 ................................. TTACCGGATGTCTGGATTCTGGTAAACCGGTAT 144852 33 100.0 34 ................................. GTCAATGCCGGAACCAATAGGAACCCCGTCACCT 144785 33 100.0 35 ................................. CGTCACATCGTACGTCTGGCAGAATGCGCCTACCA 144717 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 144648 33 84.8 9 .........................C..TTCC. TTCCGGTCA Deletion [144607] 144606 32 75.8 0 ............A.A.-..A..CAA.C...... | G [144577] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 97.2 33 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCACTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : CCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAATTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //