Array 1 227546-227969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDN010000001.1 Clostridium botulinum strain KM25 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 227546 30 100.0 36 .............................. GATTTTCCTACAGGTCTTTTTGGTGGAGGTGGTATA 227612 30 100.0 34 .............................. GCAACGGTATGTTTAAACAAATCCGTTGGTATGA 227676 30 100.0 36 .............................. AAACAAATGTAATCAGGGTAAATACAGAAAGCAATT 227742 30 100.0 35 .............................. TGCCATACAAAATTTAGGGGCAGTAGAAAGTTACC 227807 30 100.0 36 .............................. TTATTTATCCCCCTATATAATTTCAGCTTTTATTAG 227873 30 100.0 36 .............................. TTGCACGTCCCATAAGGGTACTGATATCAAACTGTT 227939 29 83.3 0 ........A........T..A.-..A.... | AC [227944] ========== ====== ====== ====== ============================== ==================================== ================== 7 30 97.6 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : GGACCTGGGATAATCAAGGAAACGTTGAGGATGTTGCAACAGGAAGTGCAGCTGGACCATTAGGTGCATATTTATATAAGCATAATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATATTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAAATTGAATTTGCGATTTTTTATTGCGCAATCCAAATATATTGTAAAGTTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTAGAGCGTTGACACATAAGGCTTATGGTAAGTTTTTATTTTATATTTGTAAAAAGCAAAACTACTTGGAAAAATTTCTTTAAAATCTTGTCAAATCAATGGTTGTATGATATCCTTGAAATTAAAGAATGGCTATTTTACTATG # Right flank : TTAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGTTTTAGAATAGAATATAATTAGTTAATTAAGTTTCTATTAACAAAAACAATAATACTTTTAAAATATAAATAGAATAATTGGTTATATTGATTAAAGGGTATATGTTATAATATAGATAAATTTGTATAAATAGGTGTATAAATGGAATTTTGGGGACTGATTGTAACAGTAGATGATAGATCTTGGCTGCAAAATAATGGGGATTTAGATTTATCTACGGGTAGATTAGAAGATAATTTGGAAAAGAAATATAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAGAGAGCATAGAGTTTAAGAATAGAAAACCAATGCATTACAACTATAAAGGTATAAAATTATTAGCAAATAAGGTAAGTATACAAGTGAAGGATAATGAAGAAGCACAGAAGGTGGCTTTCTTAGCAAGAGCAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 244089-244775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDN010000001.1 Clostridium botulinum strain KM25 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 244089 30 100.0 36 .............................. TAGAATAAAAAAGAGGACAATTCCAATTAAGGAACG 244155 30 100.0 35 .............................. CTGTGAATGCATAGGAAAAAATGGCCAAATGTTAG 244220 30 100.0 37 .............................. AACACAATCAACATAATAGTTAACCCTATAATTGGAT 244287 30 100.0 34 .............................. CAAGATTTAGCTTCTTCCAAAGTAAAAGATATGA 244351 30 100.0 36 .............................. GTGCTACCAACGCCAGAGGTAGGTCGAGCGATATCC 244417 30 100.0 37 .............................. GATTTAAGTCACACTAGAGTGGATATTATGGATACAG 244484 30 100.0 35 .............................. GGTATATGTTTAAGTATAGTTGCTATAGGTTGTGT 244549 30 100.0 38 .............................. GAAATAACAGAAGAAGAGCTTGAAAATGCTACAGGTAA 244617 30 100.0 35 .............................. GATAACTACTGGAACAGATGCAAAAGGAAAAGTAG 244682 30 100.0 34 .............................. TACCTGAAGCTTTTGTATAATTTCTTTTCACTAC 244746 30 83.3 0 ........A......GA...........GC | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.5 36 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGTTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAACCCAGATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTTGTTATGTGTTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGCTATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATGGTTGAATAGTAACATGGGATGTATTTAAATATAATTAATGTGCTATATCTTATGCCATCTATAAGTCGAACCTTAACATAGGATGTATTTAAATCAAAAAGAGGTGATGTAATGGCTGTTGATGTTATAAAGTCGAACCTTAACATAGGATGTATTTAAATTTTTATTATCCTCATCTTTTTTTATCATATTAATTTAGGTCGAACCTTAACATAGGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 245056-245416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDN010000001.1 Clostridium botulinum strain KM25 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 245056 30 83.3 34 ..T...TAG......G.............. ATAATTAATGTGCTATATCTTATGCCATCTATAA 245120 30 100.0 37 .............................. CAAAAAGAGGTGATGTAATGGCTGTTGATGTTATAAA 245187 30 100.0 38 .............................. TTTTATTATCCTCATCTTTTTTTATCATATTAATTTAG 245255 30 100.0 37 .............................. GAGGTTAACTATGTTGATTTTAAGAATAGCAATGAAG 245322 30 100.0 35 .............................. AGTACAGGTACAAGCTATGCAGAAAGAGCTATTGT 245387 30 90.0 0 ..T.........................GC | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 95.5 36 GTCGAACCTTAACATAGGATGTATTTAAAT # Left flank : AGTAACATAGGATGTATTTAAATGAAATAACAGAAGAAGAGCTTGAAAATGCTACAGGTAAGTTGAACAGTAACATAGGATGTATTTAAATGATAACTACTGGAACAGATGCAAAAGGAAAAGTAGGTTGAACAGTAACATAGGATGTATTTAAATTACCTGAAGCTTTTGTATAATTTCTTTTCACTACGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACCCAGATCTCTAATTTGTCGTGAGTCGCTTACTCCTTCGAAAATGATATAAGGAGTTTCATTAATGAGCATAATGTATATCTTATATTTAATTAAATTTTTCCAAGTGAATTTAAAATTCAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAGGTTTTTGTTATGTGTTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATGGCTATATGCTATTCTTAGAACTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCTTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGCATTGTGATAATTTCTATATAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGGAATTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATATTAAAAATCTGTCTATTTTTAGGGCAGGTTTTTAATATTTAAAGGGAATAGATAAGATAATTTTTTGTAGTCATGTAAATATTGTATATTATTTTATATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGTATTGTGGATAGATTTCGTA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 4 1532686-1532457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDN010000001.1 Clostridium botulinum strain KM25 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1532685 30 100.0 36 .............................. CCAGCTTCTAGTTTATTAATTACCTCATCTATAGCT 1532619 30 100.0 36 .............................. ATTTCTAATTTGGCTTTTTTTCTTTTGTTATAAGTC 1532553 30 93.3 37 ...........G.......G.......... TCTATTTTACGAATTATTTTATTTGTCATCTTAAAAG 1532486 30 90.0 0 ..........................CTT. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TACTTACAGATTTAATGAAAAACACAGAATCCTATAATATTAATGTTATAAATGTAGATGGGAGATCTAAATCCATGAAAGATTTTTTATTGAAATTAGGATTTGAATGTGGTGTTAGTCAATATGAGATGATTTTAAAATTATAATTATTTTATAATTTATCAGAATGGAAAATATCTTATTAGAATCGTAGGTGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCGGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCATTGATGCTATGAATAAAAACAAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTCTAAAGCCTATCCTAAGCATTGCAATATAAGGCTTAAGATAGGTTTTATTTATGTTTTTCTGAAAAATCATAAATGGTTGAAAAAATTTTTTTCAACCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATA # Right flank : ATTTTGAAGAATTTGAGTTATTATAAGATATTATTTACAGCATATCACAATATTACAAGGAATAGATGGAATTGAGTTGTTTTTTATAATGTAGGATTATTATAACAGCTTTTAAAGGTATTAAAATAAGAAATACTTTTAGAGAAGATAGATATCTAGAAAAATAATTAGAATACTTTATTTGTGATCTAATATTTAAGCGTGGAGTAAACAGGACGTTTACTTAGCTCTGTTGCCACAGGATGTGGCATTAGGGCGTTAGCTGAAATATTAAGGCACAAATATTAGTATTCTTTATTTTTATAGCTATCTATTGACTAAAAGTATTTCTTACTTTAATTCTTAACCTTTAAAAGCTTTTAAGCCGTAATTTCCTTAACATATGATTTAAGTACTTCTTTTGTTTCAGAGGATGCAAAGGATGCCTCTATTGCATTTAGATATAGTATTTTATAATCTTCTATAGATAAACCGCAAAACTTATTAAGCATTTCTAGTTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1593869-1594306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDN010000001.1 Clostridium botulinum strain KM25 1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 1593869 29 96.6 38 ..............T.............. CGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 1593936 29 96.6 35 .....................G....... TAGAATATTTAATATCCGAATATAAAGAAAACAAA 1594000 29 82.8 117 ............A.T..A.....A....G TAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 1594146 29 89.7 37 GC.................C......... CGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 1594212 29 100.0 37 ............................. TCTGAGCTTGATATGGTCTATCTGCTAGTTTTTGCGG 1594278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 6 29 94.3 53 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : ACTGAAATAGAGGAGCATCAAAGAAAATATTCAGAAGAGATAAAAGAAAAATACGGTAATACCTCTGCCTATAAGGAAAGTAATAAAAAAACATCCAAATATACAAAGGAAGACTGGAGTAATATAATGAAAGATTGGGATGAAATTTTAAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATAAGGAAGTTCAAGAATCTGTCCACCAACTTAGGGGGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGAGGTCTTGGAGAACTTTATGTTAATGATGAAAGATTTACTGCTAATATAGATAAATATAAAACTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAAAATCATATGCTTTTTTAAAATATTATCTAAAATAGCTAGTATTTATTACACAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATCTTACATGCTG # Right flank : ATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAGACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATACTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAACA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.72, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //