Array 1 46684-44659 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCJ01000114.1 Campylobacter sp. AAUH-44UCsig-a 1107213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 46683 36 100.0 28 .................................... GGCGTTGAGGTTGAACGCTGTTTTAAGT 46619 36 100.0 28 .................................... GCTGGAATGTTCGCGCTCGACGGCTTGG 46555 36 100.0 29 .................................... GACCGATGCATTTTACACCACCGAGAACG 46490 36 100.0 29 .................................... CCAGGTGCGAGCCAAAGACGGGACACTAG 46425 36 100.0 28 .................................... CCAGACACGCCATATAGTCCGCTTTCTG 46361 36 100.0 28 .................................... AAGTCCATATGTCCGGCATCACCTTTGA 46297 36 100.0 28 .................................... GAGGACGGGGACGCGGTTTCGGTGACCG 46233 36 100.0 28 .................................... TTATCGCAGAAGGTGAAGACGCAGACCC 46169 36 100.0 28 .................................... TAGCGCCGATGAGTAGCGACGAACTGAG 46105 36 100.0 28 .................................... TGTGGTGCCCGCCCGCGCTGGGAGTGTC 46041 36 100.0 28 .................................... GTACGATGTGGCGTACGACCGTAGCGCC 45977 36 100.0 28 .................................... GCTTGTTCGGATAGAACAGCGTCGCCGG 45913 36 100.0 28 .................................... GCGTCGATTAACTGGACTCCAGCACGGT 45849 36 100.0 28 .................................... GCGGCGAGCTCGGCTATTCGCGGTGGAC 45785 36 100.0 29 .................................... GTCTTTGGTGTGGGCGCTGGTTCCGGCTT 45720 36 100.0 28 .................................... CAGACCTTGAGCAATCTATCGGCGCTAT 45656 36 100.0 28 .................................... TCCGTTGGGAATCGGCAATACTGAACGA 45592 36 100.0 29 .................................... TTCCCCTTGGTCAGTCGAGGTAGCTGGGG 45527 36 100.0 28 .................................... GGCGACTCCCTCACGTGCGGGGTAAAAC 45463 36 100.0 28 .................................... TGTCAAGGATAAGGAAGGTAAGGAAGTT 45399 36 100.0 28 .................................... CGTGGTAGGTGTTGAGTGCTTCGATGTA 45335 36 100.0 28 .................................... ATCTGGGTGAGTTCCGTATTCCGATCAC 45271 36 100.0 28 .................................... TTGACGAACATGGAGAGGTTGATGCTGA 45207 36 100.0 28 .................................... GAGGTTGTGGGTTCGAAGCCCACGGGAC 45143 36 100.0 28 .................................... GCAATTACGGTTCCTACTATCAGACGAT 45079 36 100.0 28 .................................... GTGTGCGCGTTTCCCTGATTTCGACCCT 45015 36 100.0 28 .................................... TTGAGCGTGCAACGCAGATTGCTGCGCA 44951 36 100.0 28 .................................... TCGGGCTTGGGCTGCCAGTTGTCGGGGA 44887 36 100.0 29 .................................... TTTGCGGCTTGCGCGAAGCAGTTTTCGAA 44822 36 100.0 28 .................................... GCGTGTTCGATGAGGGCTTCGGAGCCTG 44758 36 100.0 28 .................................... ACCTGTGGGGCTGAGAGTAGCCGACGTT 44694 36 91.7 0 .................................CAA | ========== ====== ====== ====== ==================================== ============================= ================== 32 36 99.7 28 AAAGAATATCAAGAGTTCTGGTAACTGATTCCCAGC # Left flank : GATGCCGGAAGTGTTCCACGTGTCTTATTAGATCTCGCCCAACAGTATGGGCGTTATGTCGAAGGAGATATTGAAAAACTCCCGGTTCCTTCGTGGCAGGGGCCATCAGCGTTGAATACGGATCTCAAGAATGCCTGATTCTCCGATGTGGTGTGTTGCGATGTTTGATTTGCCTGTTTTAACGGCTCCGCAGCGTCGTGAGGCAACACGTTTTCGAAAATTCTTGCTTGATCGCGGTTTTTTGATGGTTCAGTTCAGTGTGTACGTAAAGTATTGGCCGACTGGCGGAATCGATATGACGACGATCAAAGCGATTAAGGGATCCTTGCCAACGGGAGGGAAGGTTCGGGTGCTTGCCGTGACTGATCGCCAGTGGTCGTCTGCTTACTGTTTTGAGAACGCACGTGAGCAAGTAGCAGATGAGGCGCCAGAACAATTGATGATTTTCTGACGCCTCAAAGGCACTTTCCCGCGCTATTCTGCGGAAAACCACAGGCTCT # Right flank : ATAATAATTTCAGTTAAGAAAACACCATTAGAGCTGGAAGCACACTTAAATGCAATACGTCTTGGGGGCAGGGCGCATTTGCGCCCTACCCCCAAGGTCTGTGCGAGACCTCGTCGATTATGACGAAGCCCGACAGTCGAAAACCGAAACTAACGCACCGACGTGTGGCACTCAATCGAACGCACACCCCACCATGCGACACCGATTGCCAGCAACACCGCCCCTACGGGCGCACCAATGCCGACAAACTGCGGATCCGTATCAGCTAACAGCGCGTTCACCAGGTCCGTGACCCAAAAGCCAAAACGTAACTCGCCCGTGTTGACATCCATCATCAGCGGGAAGAACGCCATCGCAACAAAGGACACCACCTGATTCGCCAGATAGAGGATCACGAAACCCACTATCGCAGCTCCAAAGCCATGCTTCTGCCAACGCTCGCGAGCACTCAAGCTCATTCCAGCAGCGACCTCAAGAACAATCGTCACCAACTGCACTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGAATATCAAGAGTTCTGGTAACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8250-6774 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCJ01000225.1 Campylobacter sp. AAUH-44UCsig-a 1107327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8249 30 100.0 38 .............................. AAGCCAAGAGGATTTTTTATTCTCTCTTCTTCGCTCAT 8181 30 100.0 36 .............................. TATAAGTAGTTAAGGCTACTAAATTTCTTAAAAAAG 8115 30 100.0 33 .............................. ATCAATAGTCCTGAAAAGACAGACGACGGACTA 8052 30 100.0 35 .............................. TTAGGGGCTGGCAACTTCATATTTGATAATTACGA 7987 30 100.0 36 .............................. TAATCGATGTTGTATGCCTCATAACCCTTGCACCAT 7921 30 100.0 36 .............................. TGAACTAGTAAATTACTATGAGAGCTTGGGCGGTGA 7855 30 100.0 35 .............................. AATTTGTTAGAGTGGGCGGAGCGATATAGATTTTT 7790 30 100.0 37 .............................. AACGCCATATACAGCCCTTTTTACAAAATGAGCGAGA 7723 30 100.0 36 .............................. GAGAGCTTTGGGATCAGGCAAAAGTGCAAGCAAAAG 7657 30 100.0 36 .............................. CGTCTATGGCGGCTCCATTTATGATAGTCCATTTGC 7591 30 100.0 34 .............................. TCCCAAAGATAGGCGTCTTTTAGGATTATGCCTG 7527 30 100.0 37 .............................. AAAACAACCTTTTGCTCTACTTCATCAGTAAAGCCAG 7460 30 100.0 37 .............................. AACGCCATATACAGCCCTTTTTACAAAATGAGCGAGA 7393 30 100.0 36 .............................. GAGAGCTTTGGGATCAGGCAAAAGTGCAAGCAAAAG 7327 30 100.0 36 .............................. CGTCTATGGCGGCTCCATTTATGATAGTCCATTTGC 7261 30 100.0 34 .............................. TCCCAAAGATAGGCGTCTTTTAGGATTATGCCTG 7197 30 100.0 35 .............................. AATCTCAGGGCTGGGAGTATATCGACCCAGTAAAA 7132 30 100.0 38 .............................. CATTAAAATCAGCAAATATATCTAATAAAATTTATATA 7064 30 100.0 36 .............................. CAGCAACAAGAGAACCGGGAGCTAAAGAAGCGAAAG 6998 30 100.0 35 .............................. TATGGTTGTGTATTCGTCCTTGACGAGTGCCACAA 6933 30 100.0 34 .............................. CTAGCTCGCTTTGTAGTAGATCGTGAGGCATTGG 6869 30 100.0 36 .............................. CATCTACAAAGCAAACAGCAAAGCAAATGAAGCAGA 6803 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AAGCGAAATTTACAAGACCGAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGATCCTTGAGCCTTCACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTCCAAACGGATGCTGGCAGGATAAAATTTAGCAACGATGCTGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACAGTGGGTGGCAGGTGATCCGCCGCGAAGCGAATAAGCTCAAAAAGTGTATCTGCGAGGACGTGCCTTATGAAGGCTTTAGGTGGGAGTAAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : AACATATAAGCGACGATTTAATTTTCATAGAAGAAATTTAAATAATAGATCAAATAAACAACAATTGCTATCTTACAAAGATGTATCAAACTGATGATAATATAGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCCAATACAGCCAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCACCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 7114-7298 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCJ01000200.1 Campylobacter sp. AAUH-44UCsig-a 1107302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7114 37 100.0 34 ..................................... TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAAC 7185 37 97.3 40 ..................A.................. GTGAAACACACCGTAAATATTGTAGTAAGTCATCTTTTGC 7262 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 98.2 38 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCT # Right flank : ACAAAGTGTTCATTTTTAGATGCTCAATTTATAATTGATACAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 7531-6579 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCJ01000082.1 Campylobacter sp. AAUH-44UCsig-a 1107181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 7530 37 100.0 37 ..................................... TCTAGAACATCATAGAGTGTTGGTGTTTTATTCTCTA 7456 37 100.0 38 ..................................... AGCTTACTTCTCTTTCAAAGACAACGTGGTTGCCTTCA 7381 37 100.0 40 ..................................... TCCATCTTGGAATGAGATCCAGCCCTCCCATTCCTGAGAG 7304 37 100.0 37 ..................................... AACTATGAAAGTTTCGGGCATGATCTATAAGACCACC 7230 37 100.0 41 ..................................... AGCTACCATTGTGAGTGGTAGCGCCAGCTTTTGTGGCGGAA 7152 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 7075 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 7000 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 6924 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 6849 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 6772 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 6692 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 6616 37 94.6 0 ................................A...A | T [6581] ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 99.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTTACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 6082-4583 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPCJ01000241.1 Campylobacter sp. AAUH-44UCsig-a 1107343, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================== ================== 6081 33 100.0 44 ................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCATATTA 6004 33 97.0 49 ....G............................ AAAGGAACAAGTTGGCGGCAACACTTTCTGCCCAAGCCATTTAGAATTA 5922 33 100.0 51 ................................. AAAAGCTCGGCTAAGTCGAACTTTTTTGTTTGCTCTTCATCAGTAGCATTA 5838 33 100.0 39 ................................. TGAGAAAAAAGGATATTTTTAAATTTTCCATTTTGATCT 5766 33 100.0 47 ................................. GCTTACTAGCAATAAGCTAGCTATTAATACTCTTTTCATTATCATTA 5686 33 97.0 45 ................G................ ATAAAGCATGTCTCTTCACGTTTTTCGCCATTGACATTAAAATCC 5608 33 100.0 44 ................................. TACCTCTTTCGAAAAAATTTCTTCTGCAGCAATTGATCTTATTA 5531 33 93.9 41 .......T........................T CTTATCAAGGAATTTCTTGAGATAAAGTCTTCTTTGCATTA 5457 33 100.0 44 ................................. GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTAATCT 5380 33 90.9 45 ................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAGATCT 5302 33 100.0 43 ................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGACATCT 5226 33 97.0 45 ...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGTATTA 5148 33 100.0 42 ................................. TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCAATTA 5073 33 100.0 45 ................................. AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGCATTA 4995 33 100.0 43 ................................. AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGAATCT 4919 33 100.0 43 ................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCATATCT 4843 33 100.0 41 ................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTTATCT 4769 33 100.0 44 ................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCATATTA 4692 33 97.0 44 ....G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAAATCT 4615 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= =================================================== ================== 20 33 98.5 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TGCTCTGCTTATC # Right flank : GGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA //