Array 1 2730095-2728758 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2730094 37 100.0 32 ..................................... ACTACTGTTTGTGGTTTTCGATTTGCTTTAAA 2730025 37 100.0 34 ..................................... GCTCAGTAAGCTGCTCCCAAGAAGAACGGTTGAA 2729954 37 100.0 33 ..................................... AGGAACACCATCACCATCAGCATCAGAATCAGG 2729884 37 100.0 35 ..................................... AGTATGTATTGTTTATCGCTCAATCTGAAAAACAG 2729812 37 100.0 43 ..................................... AGGAACACCATCACCATCAGCATCAGAATCAGGAATATTAGTA 2729732 37 100.0 34 ..................................... ACCATCAATATCAGAGGATGAAGGTTGATAATCA 2729661 37 100.0 36 ..................................... GCTCGTTGCTACTTTCGGTTTTAGTTTACTTATCAA 2729588 37 100.0 35 ..................................... TGGTTCATCCTTTGATTACATTTTTGATTACTAAG 2729516 37 100.0 33 ..................................... AAATTGGTAACAAGCAAGTGCCAGTGAGTCAGC 2729446 37 100.0 36 ..................................... TTTCTTCGCCTATTTATTCCAGGATTTACAATAAAT 2729373 37 100.0 34 ..................................... TGTAAACCCTAAAGAAACCGACTCAAACCATTGG 2729302 37 100.0 34 ..................................... CTTAAGGATTAGATAATGAATAATCAAGAAAATG 2729231 37 100.0 41 ..................................... AGTTAAGTGTTTCGCCTTCAACAAGCGGAGAGCCTCTAGCA 2729153 37 100.0 37 ..................................... AAATTGGTAACAAGCAAGTGCCAGTGAGTCAGCGTCA 2729079 37 100.0 34 ..................................... GAATCATTTAATTTAACTGGACGAATATTTTTAC 2729008 37 100.0 34 ..................................... GTATGTCTTGATGAAGCTGGAATCTTTCTGAATG 2728937 37 100.0 35 ..................................... GATGGAGTAGTTAAGGATTACAGAGCAGACAGAGG 2728865 37 100.0 34 ..................................... ATGAGGGGTCTAACCCTACACCCCAGACCTTGAA 2728794 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 100.0 35 GTTTAAACTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TTCGTTATCAAAAAGCCGTCGCCGCCACCACAGCCGCCGATGTGCAACGGGTAGCCAAGCAATATCTCAAACCAGAAAACTTAGTAACTCTAGTTGTTGGCAATCAAACTACCATTAAACCGCCATTAACAGGTTTGGCAAAACAAGTAACACCCATAGATGTAACAATTCCCGGTTCGCCTTCACAAGCGACAAATTGATCACAATATAATATCTAGATTCCTGACTTTTTCAAAGGTCTGGAATCTGGAAACTGCAAACAAAATCCTCAAAATGCGCGGATGGGTAGGTGTACAAAATCTCTATGGAGAGACAATGGCTGGATTCCTTTCACTGCAAGCTTTTGCAGGAAAATTACACAAAAACCACCCGCGCACCTTATCCAGTCTATGTTTCAGCCATTTTGCTAAAATCAACTGCCATTTACTCGTGTTAAAATCAACCCATCCGCGAAATCGAACCTTGAAAACTAAATACAGACAGCCTTTCCGGCTCCCGCA # Right flank : AATTCCTAATGAGACTCTGGACATAAAAACTTACATTACGATGAACTTTTTGCTTTTATAGACGAAACTCCTTGAATTGTGTCTAAAAAATCAACTAAAAAATCTTGAATTTTTTAAATGCGTATACAAAATATAAGAGAGACATTTTAGATATTGTGTAGCTAGATTTTAGGTATAGCTACACTAATTAGGATTACCGTATTTGCGGAGGTAAAATCAATGGCAAGAATAACAATATCAGACCTTTATCTCAATAATAACGAGCAGCATATTACTGAACTAACTGCTTGGGAAGCCAGAACTGTAGAGGCAGGTGCAAGTACAATCACAATCGACACTAGTGATTTATTAAAGCTGCAACAAAATATCAATGACATTCTTCAGGGTGTGTCAAATCAACTAAGACAGCAGCAGCAGCAACAACAACAACCTAATAATAGTTATGGTCTGCGACAACCATACGACAATTACGTTTATTATTAATTCTGGGCGATATGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 3230938-3230314 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3230937 37 100.0 37 ..................................... TTCAATTTAAAATTGTCCGCCGTTTTACTCCTGATAA 3230863 37 100.0 42 ..................................... CCCAAGCAGCGATTTTGTCATACTGACTCAGACAAATTACCC 3230784 37 100.0 35 ..................................... TGGGTTGACCGTTATTTACTGCTATTACATATACA 3230712 37 100.0 33 ..................................... AGATGGAGCCATTAAAATACGCGGCACTCGCAA 3230642 37 100.0 35 ..................................... TCATAAGCTTAAATATGTGGACATCAGTAAACAAT 3230570 37 100.0 40 ..................................... TCGCCCTCATCTAAAACTTGGCGGATTGTGGACATATTAA 3230493 37 100.0 35 ..................................... TTTTAGAGTCAGGTGACAGCGTTGGCGGGAAGAAA 3230421 37 100.0 34 ..................................... AAAATCATAGGCGGCAAACACAAAGATAAATTTG 3230350 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 100.0 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : TTAGATGCTCTCAAAGATGCGCGAGGGCGAGTTTTAGATTTGCAAATTGAAGAATCATTAGATATTTTAAATTTCTAAATTCTTTTCTTGCATAATTCTCTATTGACACATTCTTGCTTACGCGAGCTTCGGCGATTGGAGTCCACTGTTACAAACGACCAATTCAGATGAAGTTATGAGTATTTTAATCCGCCAAATCTTGATGTAGCATCTAGATACCAGACTTTTTGGAAAAGTCGGGCATGTGAACACCACAACAAAAAATTTCTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTGAGCAACAATGGCTGGATTCCTTGGAGTACAAGCTTTTGCAGAAAAAATTAATTAAAATCATCCGCGCACCTTACACAGTCTATATTTCAGCTATTTTTGTTCAATCAACTGACATTTGCTTGTGTTAAAGTTATTCCATCCGCGAAATCGAACCTTGAAAACTAAATATAGATACACTTTCAGGCTCCCACA # Right flank : GCTGCCGATGTGTGGCGCGACAGATTCCATAAAGTGCAATACGGTTCAGATAAGAAAACTAAATCACAACAAAACCAACAAATAATTACTCAACCAAAAACGCAAGAATGATTTTGGAGGGGGTTTGGGGGACGCAACCGTCACCCAATCGGGGGCTTGGGGGATTCTCCCCCAAATCTTGTTGATTATCTGATAGGTAAGCAGAAATTGAGAAATCAACTCTCATCACCTTAACTGAACCGGATTGCCGTAAAGGGTTGAAATTTCACTTAATCTCTATGACAAATTCAGAGCATCCACTTTTGGCAGCCCTGCGCTAAAGCGCACGCTACGCGAACAGACTAGAAGTCTGGGGCTATACAAACTAAACCCGCGCAGGCGGGTTTCAGAGAGTCTTCGTAGGCGGACTAACCTTCGGGAAGCCGCTTGCGCGTCTACGTTTATATCACCGCGATTTCCAATCGCCCGGTGTTTCTTTTAAAAGTGGATGCACCCGACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 3300503-3301031 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 3300503 34 97.1 36 A................................. CAGAAAACGTAAGGCACATGAACGCGATTATTCAAA 3300573 34 100.0 39 .................................. CCCCTTATTAGGCGTGGTGCTTTTGAGAATGGGTTTTTT 3300646 34 100.0 41 .................................. CAAATTGGAGATTTTAGACATGTCTGGACAAATTATTTCCG 3300721 34 100.0 18 .................................. CAAGCCGGTTAAGACATA Deletion [3300773] 3300773 34 88.2 40 A...TT.C.......................... CCGGGTCTAAAGGGTATGCGTTACGTTTCCTGATAGAGTT GC [3300780] 3300849 34 100.0 39 .................................. CTGCAACCCCCAGATCCCATTCAGCCGGGATTAAACTTT 3300922 34 100.0 42 .................................. CCATGCGTGAGCTGTTCGAGTTGGCTTATCAACTGACTCATA 3300998 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 8 34 98.2 37 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : GGCGATTACTTCTCTATTTAATCATGAGCGATCGCACACATTATTATATTCCCACTTTAACTTAAGCGATCGCACTCCCTTAACAACATTTGAACTATATTAAACAACTACTCCGTATCCTGTGTACGGCCGTTTGTATGGTGGCTGCAAACCTAACACAATATCTTCTTTTTGGACTCCCATCTCTAATAGTTCTTGTGCTAAGTCCACATCTGTCATATTCTGCTGAATCCAGATTTTATCATTTTTAATATCAAAATGAATAACAGTGTGATACACACGACTTAAACCATTCCAACCTATACGCATCAATTGATAGTGGTCGTGCATTGTATCAAATATTAATTCGTTTTCAATCTCTTCACGTTGAGGTTTATACTTACTGTGTTTTGCTAAGATTTCTTGGATAGATTGGCGGTATTGCTCTAGTTTGTCCATCTCACAATCACTTCCATAATTGGATCGTATATTATTAGTTTTAGTTGATGTCGCCGCATGAT # Right flank : ACCCTACCCTTTTGGAACACTTGCTATGACTGGGTTTGAAAGTGCCATTTTAGCGGGGGGTCTGATTTTACTATCAATAAACCTACTTTATTGACAATTGGATACCATCACAGACACCTCAAAGCCTTACTGAGTAAGTGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTCAAGCATTGCCTTACCCCCGCGAAAAATTTGCGTGTGAAAAGTAAAAATCAAGACTTTAACTTTCACCAGGAAACGCAATATTAAGTTTTCAAGGTTCTGCTTTCTTGAAACAGAGTATACCAAACTACTCCTCAGTTTTTAAAGCGCGACGTGCCAATTTCACATAAGTTTTTACAGTTTCATAAGGCATTTCTAAATCTTCTGCCACCACCTGCAACGACTCTCCCATTTCTCGCCTTGCTAAAATTGTCGCCCATTTTGAGGCGATTTCATCTGCTCGTTCTCCACCCGTTCGTTTGCGTCGTGCTTTAAATATCTGTGTTAAAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 3306115-3307844 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 3306115 35 100.0 34 ................................... GGAGATTTGCAAAAAATAAAAAACGCTATGTCAA 3306184 35 100.0 46 ................................... CTCTCTGCAAAATCAGGGAGAAGAATTGACCCCTGAGGAAGAAGCC 3306265 35 100.0 38 ................................... AAGAGAGATCCACATATTTTTACAGTTGAAATTCTTGA 3306338 35 100.0 38 ................................... TCTTTGTATTAGGATCACTAGCATACTTCCACCATGAG 3306411 35 100.0 37 ................................... CCTAAATGGAGAACAGCTTACTTCCAAAACTGTAAAT 3306483 35 100.0 40 ................................... TTATAGAAAAAGGCGGAGCCGCATTCGATGCGGCGATCAA 3306558 35 100.0 36 ................................... TTGTCACGGATATTTTGTTGCCTGGGTGGCAAAAGC 3306629 35 100.0 36 ................................... ACGTTTTTGTGTTGGTAAGCAATGCTGCTGGGGATC 3306700 35 100.0 42 ................................... ACTTGAGTTTCACTCTAAAGGACAGGGTGTTGCTGTAGTAAA 3306777 35 100.0 38 ................................... AATTGGCAAATTTCTGCGTTTGGAGGGATTGTGTTTCC 3306850 35 100.0 39 ................................... AATGTCGCAAAGAAAAATCTTCGAGATAAGATTAGAAGT 3306924 35 100.0 45 ................................... CGTATCATATAGGCGAAGATAGTCTTAAAGACTGGGGTATTCTTT 3307004 35 100.0 36 ................................... CACAAGATGTGCGCAATAACTTGGAGCAGAGAAAAA 3307075 35 100.0 39 ................................... GATGTGCTTTGAATTTTTCAAAGCACAAAGTCAGCCATT 3307149 35 100.0 37 ................................... TAGTGGTAGTTTTGGCGAAACTACATGCAACGACAAA 3307221 35 100.0 38 ................................... AATTTTCGCCGAGCGGCGGCGTGGGCGGAGCAGCAACG 3307294 35 100.0 39 ................................... CATTCGGCATTCTGGCTCGGTTGGAGGTCGCATTCGTGA 3307368 35 100.0 40 ................................... GATATAGTTGCCTCGCTTGCAACTTTAATAGCACATAAAA 3307443 35 100.0 37 ................................... TCTGGGGCAAAACATCACCTTGTCGTACGGTACCGAG 3307515 35 100.0 36 ................................... GAATTCTAGAGTTAATGTCTCAAAAGGGCTATTCTA 3307586 35 100.0 38 ................................... ATTAAATGGTTACCAGCTCCTGAGAGGCTGGCAACTAT 3307659 35 100.0 40 ................................... TTTTTATTTTCCCATTTCATCTCCTGCGGGAGGGGAGATG 3307734 35 100.0 41 ................................... CACAAAAGATCTCAGAAAGGGGCAAGCGCATCCTCGCCCTG 3307810 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================== ================== 24 35 100.0 39 GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Left flank : GTGGACGAAGGATTATTGCCCTTAGATGATATTGAGTTTTCCAAATGAGTTATTTATACTTATTAGATACAAACATCATTTCTGAACTAATTAAAAATCCCAGAGGACTGATATTTTCCCAAATTCAAAATGTCGGAGAAGATACAGTTTGTATAAGTATTATCGTAGCTTGTGAGTCAAGATTTGGAGCAAAAAAAAAGAACTCTCAAAAGCTCATAGAAAGACTTGAAATCATCTTGGATAGTATTGAAATACTACTCCTAACTCATCCCGTAGAGGAATATTACGCAGAAATCCGCACGGATTTAGAACAGCAAGGTAAACCGATTGGCGGTAATGACTTATTAATTGCTGCCCATTCCTTAAGCCTTGGTTTAACTCTCGTTACCGACAATGTTCGCGAATTTTCCCGCGTTTCTAATTTAAAAGTAGAAAACTGGCTCAAACCTGATTTAAAACCCTAACTATTTCAGCTCATTTGTTTCAGAGTATGGCAAAAC # Right flank : CCCTACTCTTACACAGACCTTACCAAATAAAGCTTACAGAAGTGTAAAACTGAGGGGGGTCTGTTTTACCTGTCAACAAACTACCATTATTGACAATAAAGGCAGTATCAAATTCACTCAAACGCTTATACAGTAAGTCATCTGAGGGGGTCTACGAAACAATAGGCTTTTCAGCATTTGGCTGACCCCCTCAGTTTACATTTCTTTACAAACTTGTTTTAGGAAACTAACTATTAAGTTACAAACAAAGAAGGCTGATTGAATTTTCATGGTGCAGGCATTGGTATAAACAATACCATACCAATCAACATGATGCAATTTCTTGATTAAGGTTTCCAAATCATTGGTCGATAGATTTTTACCTCTCCTGTCAGACAAGCTACATACTCCCGCACTTGTAACTCTAAACACCTGCGGAAACTCACCTTATATCCTGTATTTGGGTGCGTTAACTCCGACTGCAACTTTTCTTCCCAGTGCTTGAGAAACTTTTTCAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAGTGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 3314040-3312106 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 3314039 35 97.1 37 A.................................. ACCTTCCGTTGGACAGTGTCAAACGAGATACTGCTGA T [3314034] 3313966 35 100.0 40 ................................... TCCAATCACACCAGCACAGCTCGCCGCGCAACTACTTCAG 3313891 35 100.0 38 ................................... ACCAAAGTTTGCATCGGGATAAATCCCGATGCGACAGA 3313818 35 100.0 38 ................................... TATAATTTGGATATCCTTCACCGCTTAAGCGGGAAAGG 3313745 35 100.0 35 ................................... AGTTCAGGGGCTTAGGTTCCTGCCTTGTCCTTGAG 3313675 35 100.0 38 ................................... ATTTTGATCTGACAGTTTTTGAAACTGAAGTAAAAAAA 3313602 35 100.0 34 ................................... CCCTGCTCCAAGCATTAGTCAGACTGAAATTAAA 3313533 35 100.0 37 ................................... CTGGTTTCAGCGCGGTTACTGGTGGTCTATTAGGTTT 3313461 35 100.0 36 ................................... TTTTGTTGTAACCGCGTTGCAGCAAGGCACCCTTGG 3313390 35 100.0 34 ................................... AATTAATCAGTGTAAAGAATTGCAAATTTTTAAG 3313321 35 100.0 39 ................................... GACATCCCCGGATATAATTATAGTCCACCATACGTACAT 3313247 35 100.0 38 ................................... AGTTACTTCCTGCGGAATGAGTCGCAATTTTACTTATG 3313174 35 100.0 41 ................................... AATTTTCTGAGGGGAGAATCCTCTCGAGTCGCGTCGTCCAA 3313098 35 100.0 41 ................................... GATGTAGATAATTTTCTAGTAGGTCATGCGGGAAAATATTT 3313022 35 100.0 39 ................................... AATAATGATCCAAAGTGCACGCTTGAGAACATCCAAAAA 3312948 35 100.0 39 ................................... AAATGTGTAGGAGGGGGAGGTGCATCCCCCGCCTCAAGT 3312874 35 100.0 35 ................................... AAAATACTGTGTTGTGAGTTTGATGAAACTATAGA 3312804 35 100.0 39 ................................... CCGGACTCAGACAGGTACCGCAGTACAAGTCGATCTCCA 3312730 35 100.0 42 ................................... TGGTTTAGAAACTGTTTTAGTACCTGCTAACGCAGACGACAA 3312653 35 100.0 37 ................................... TTGGTTACAACTTAAGCCAACCCACTAACACAAGAGA 3312581 35 100.0 41 ................................... TATTGGAGGCCAGGGCGGAGGCATTTACCCCCATCACTATT 3312505 35 100.0 40 ................................... CATAGAACCTCTTCCCCCCTTGGGGACAAGGTGTTGTCAA 3312430 35 100.0 36 ................................... TTTCGGTGCATTCATTCCCACCAGATGCAAATGAGA 3312359 35 100.0 36 ................................... GAAAAAATTTCAGGAGCCACCCGGCAGACCTGAATA 3312288 35 100.0 41 ................................... ACTTTCTGCGCGTGTAATGCGGAGAAAGCTGAAATCCTGAG 3312212 35 100.0 37 ................................... ACGGGCTTACCCGTGACCTCCCAGGTCACAATTGCTC 3312140 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 27 35 99.9 38 GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAAC # Left flank : TGTTCTCGATATATTTCTGCCAGATTATTTAAATTAGTCGCAATTTGAAAATGCTCTTCACCAAAGATATCTTTCCACAATTCCAATGCTTCTAAAAATAGTTTTTCCGCTTCTATATAATTACCTTGTGCATGATATAAAGCTGCGAGATTATTTAAAGATTGAGCAACATCAGGATGTTCTGAACCTAGAATATTTTTCCTGAGAGTTAAGGTTTGCAAGTATAAGGGCTGGGCTAATAAGTAACGTCCTTGCATCCGATATAGTTCGGCGAGGTTATTTAAGCTATCACAATATTCAGGATTTTCTGTTAGCTGTTGATTTTTGCCTAGATTTACAGCTTGCTGGGCAACTATTAGAGCTTGTTCTAGGTTTCCTTGTCCTGCTAATTCTACAACTTGTAAGTTAAGTTGATTGAGTTGTTTTATAAGTTTTTTCATCTGCTAGTTCCAGATGTTTATATGTTTTTTCGCTTTTATTAATTACTTATTTTATCTAAA # Right flank : CCTACCCTTTTAGAAGCCTTAGCCAGAGAGGGTTAGAGATAGGCATTTCTGAGGGGGGTCTAATTTACCTGTCAATAAGTACATATTATTGAGAATAGAAGGCTATTAGACCAGACTCAAAAGCTTGTACAGTAAGCTACCTGAGGGGGTCAACGAAAGAATAAGGGTTTCAGCGATCGCCTGACCCCCTCAGGTAAACTTATGTAAAGAAAGTCAAAATCAATACTTTAAGTTCCAGTTGGAAACTTTAGATTAAGTTTTCAAGGTTCTGTGCTTTTAAAGGGCAGTATAACAAAATACCTTAAATTTTGAAAGCTGAAAACATTAACTTTTTTATCATGCGCTCACCATGTAATCTGTATACCAAAGTTGAGATTCTTCGTGTTCATGCACATAATTTAGTAATTCTGTCAGATGACTAGCTTCTAGTTCTAAAACCTCATCATTATCTTGGGTTAACCAGTCTAATTGAGGTACTTCTTTGGTAATGATGGCGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 6 3446755-3448197 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================================== ================== 3446755 38 100.0 37 ...................................... CTTTTTTACCGTTGTACTCAGTTGTGTGAACTGCAAA 3446830 38 100.0 34 ...................................... ATCAAATCAGTTAAAGACCCTTACTGGGATGAAA 3446902 38 100.0 41 ...................................... TCCAGTTCGACAAGTCGGGAACTCGTGCGGGTAGTCGGTCA 3446981 38 100.0 38 ...................................... TCCAAGTTCAGGAAGCGTGGAAGGGCAAATTCCCGTTT 3447057 38 100.0 33 ...................................... TGGCCGTCCTTCAAAATATGGTGAGCCTTCAAA 3447128 38 100.0 34 ...................................... GTAGTCGCCTGATTGGGGGCGGATTGCCGGATAA 3447200 38 100.0 34 ...................................... GAACCTACCCAGAGTCAGCGTAGGTTACTAGGCT 3447272 38 100.0 54 ...................................... GATTTTGATTTCCACGAAGCCTGATTACGATTTTCAAAATTTCCGGCGACTGAA 3447364 38 100.0 32 ...................................... GATTTTGATTTCCACGAAGCGTTGTTTATCGC 3447434 38 100.0 33 ...................................... AAGAAGCGCTCGACGTGATGAGGTAGTAGACAA 3447505 38 100.0 32 ...................................... AGCGCAATCGAAAAACTCTATTAAGGTGTAAT 3447575 38 100.0 34 ...................................... TTGCTGCCTGGATTTGTCACGAGAAGTTTTAGCA 3447647 38 100.0 36 ...................................... AGAAGTAATCCGCCGTGGTCGAGGTTTAAAGCTTCA 3447721 38 100.0 37 ...................................... CTTTGATGCCTTGGCTATTGGCACTCAAGCGGTGAAA 3447796 38 100.0 33 ...................................... GACACTAAAGTTGCCAACAATAAAGAGTTTATC 3447867 38 100.0 39 ...................................... ACTTCACACTGCCACCCATGTTTTTTTGTTGTGCCATAG 3447944 38 100.0 35 ...................................... ACTATCGACTATTTCATACATTAAATAATTTTTGA 3448017 38 100.0 34 ...................................... ATTTTCTACTATTAAGCCTGAGCCTTTAACTCAA 3448089 38 100.0 33 ...................................... AGCTTCTGGCATCACAGCTTTAAATGCTCAGAT 3448160 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================================== ================== 20 38 100.0 36 AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CTTTGTCATAAATGTAGTAACCCGTGTAGGTTTCCACATCAATGGTGTCACCAGAATCAATCGTCAGTGCTGGTGTTAATAAATGGGAGAAACCACCAAGATGCACTGTTTCTTTGGTAGCTTTTAAAATATGGTGCGTCATTACCGCGATTCTGTGCAAGATTATTGCTTAGAATAGCGGATTAGCTGTTGTAAATCTTGATGTAGTATCGAGATACCTGAACTTTTGAGAGCAGTCGGATATATCGACAGCGTAAGACAAAATTTCTCATAATGCGCGGATGGGTAGGTGTAGAAAATCGCCTTTGCTCAACAATGGCTGGATTCCTTTAATGACAAGCTTTTACAGAAAAATTTAATTAAAATCATCCGCGCACGTTACACAGTAAGCATTTCAGCTATTTAACAAAAATCAATTGACATTTCATCGTGTTAAAATTAACCCATCCGCGAAACCGTACCTTGAAAACTAAATATAGTCAGCTTTTCCGGCTCCCGCC # Right flank : CATTAGCTATTTACTAATTCATTATATAGCTATAGCCAGTTTTATTAGGACGCTGCGTGCTTGAGAACGAATTCGATAGCATCACGTAAATGATCACAATTGTGTAATTGTTTGCGAATCCTACTTTTTAACCATGCCCAACACTTCTCAATACGATTAAGGTCTGGTGAATAGGGAGGTAAATAAACAAGTTCACAGCCTGCATCATGTATGAGTTGGGCAATTCGACCACCATGATGAAACGTCGCATTATCCACAATTACCCACTCACCGGGACGCAAAACCGGAATCAAACATGTTTCTAGCCAGGTTTCAAACACTGTGCGGTTACACGCCCCCTCGACTGTAAATGGGGCAATCAATTGATTATCCCGATACCCAGCAATCATGTTAATGCGTCCCTGTCGCCGACCGGATTTGAGGTCGTAAAATCGTTCCCCTGTTGGTGAGTACCCATAGCCGTAGTTATCTCGTTCATCCATTCCCGATTCATCGACATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 7 3449200-3449463 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================== ================== 3449200 39 100.0 42 ....................................... TCCTGCTTCAGTTCTGGCTCAATATCAGCCGTAAGCTTTGCA 3449281 39 100.0 34 ....................................... ACGCCTAGCCCTGCAAGGTTAATTGCGGCGATTA 3449354 39 100.0 31 ....................................... AAGCTAATTTGTTCCCTGAGTTGTGCGCTGG 3449424 39 97.4 0 ...........T........................... | C [3449426] ========== ====== ====== ====== ======================================= ========================================== ================== 4 39 99.3 36 AAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CAAGTGTGGTGCTTTTGGGTTCTTCAGTTGTGCTAGAAAGGTTGCTCGTTTGGCTTCATCTCGTTGACAGTAGCCATATGTTTTTTTTTACGGGTGTGTCCAATTTTCTGCAATGCCCGTGAAATCGTGCGTTGACTAATCTCTCCTTCCCATAACTCTACCATTTGGACTTGAGTTTTATCACCATTTGCTTTGACAAATGCGCGAAACTTCTCCCAATCATCGATTTTGCCACCCCTTTGGCATTCCTGCCTCGATTTGACCTTGATATCACCCGTTTGGGCTTTTCTTTGACACCACAAGTTAATCGTATTGCGACTGATATTGAACAATTGGCTCGCCTCACTCTTTTTGAGACCGTCCAACTCAATTGCTTGCATCACCTTTTGCCGGAAATCATCACTATAGGGTTTAGCCATCTGAGTTTGAATCGCAATACTAGGAATACTTCATAGTTTATGTCCTAATCTTATTGGCTACAGCTATACTTAACAGTATAT # Right flank : CATTATTTTACATTCTCATGAATACAATGAGATTTTGCGTAAGTTCTGTGAATATTTAGAGTTTGATTTTGTTGGGTTTCGCTATTGCTCCACCCAACCTACTTTTTTCAGATTTCAGTCTTTACCGATATAACCAGACGCGCAATAGAGAAAGTAACTGCTCAATATCTACAGGTTTGGTGATGTAGTCTGATGCGCCGGATTCGATGCACTTTTCGCGATCGCCTTGCATGGCTTTGGCGGTGAGGGCAATAATTGGTAAGGCTCTGAATCGTTCATTTTGCCGAATTAAGCGGGTTGTCTCGTAACCGTCCATTTCGGGCATCATCACATCCATTAACACCACATCAATATCTTGTGTAGTTTCTAACATGGTGATGCCATCTCTGCCGTTTTCTGCATAGATTACCTGCATGTGATAGCGTTCTAGCATACTGGTCAAGGCAAAGATATTCCGAACATCGTCATCAACAATTAATACTTTTTTATTTGCCAGGATG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 8 3761457-3760767 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3761456 36 100.0 35 .................................... GCTCCCGTAGGATACATACCCTAGCCTAAATTCTA 3761385 36 100.0 37 .................................... TGTACCGCCATGATATTGGCGGTAAAAAGAATTACAA 3761312 36 100.0 36 .................................... CCTACCTCGTTTTCAGATGATCCGGTCATTACAGCG 3761240 36 100.0 35 .................................... TGTACCGCCAGCTTGATTTACCGTACACTTGTCAA 3761169 36 100.0 37 .................................... ATAAGTTGCGCCCATTTCTGAAAGGGCGGCAATAACT 3761096 36 97.2 35 A................................... ACAATTGTTAATAATTGTTCATTTTTTAAGATGTT 3761025 36 100.0 40 .................................... TATGTAAGTCCGTAGTCATTTTCACTGTCTAACAGAGTAG 3760949 36 97.2 34 ...............................A.... CGAACGTTAGCTTCCCCAGTGGCATTTTGCACCT 3760879 36 100.0 41 .................................... ATTCTGTGGGCTGAGGATGGAGTTGCGAAAGCAGAGCGCTG 3760802 36 77.8 0 ...................GA........AA.GGGA | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 97.2 37 GTATCCAAACCACTTCCCCCGCAAGGGGATGGAAAC # Left flank : ACTCACATCTAGCCCCGACGCATAAAATTCGCGGCGATAAAAACGTAGACGCGCCAGCGGGAAGCCGCTGGGTAGTCCGCCTGCTCGGACTAACAGAAAATCAAGGTTTTCAACCTGCAAAATGCGATCGCCGAGCGAAGTCAAAGCGCTACCCTCTTCTGCTAGTCTATCTGTATATTTTTAAAGTAAAACGGTATTACACCCAGCCTCAACAGACAATCTCTGTAGATCAGCCCTACTTAATTACAAATTACAAATAAGACTTGATAAATAATCAACACAGATGTAGTTTAAAAACTGTATCAACTTTTCGACACCACTTCTCAGAACCTTGAAAACCGTATAATTTCGTTGACTGGTGTCGATTCTTTAGTCAGACTGAGTTTCAGGCATTTTGAGCATGGCTTAATTGAGAATGAATTTCCCTTTATTGAGAATTTAAAAAGTGGTGTCGATTTGACGTCTGAAATCCTTTCCCTGTAAGCGCCCCTGAGCGAAGA # Right flank : TGGAAATATCAGAACTCCAAAAATCTCCTAGCGCCTGGAGAATTTTTGCGAAAATATCGTCATGATTGAGCTAGTACAACAAGGTAAAAGTAAAAAGGTAAAGTATTTATGCTCAGGCGCTTATGTGCGATCGCAATTTTTTCTATCCTATTAAATAACTCTTTCACACTGGCTGCACCGAAAGACCCTAGCCAAGCAGATAAATTTCCCCCCAGTCCTTTAGAAATTACGACACCTGATCCTCTGGTGCGAAGTTCTGCGAATAAAGAACCGTTAACTCTGGTAGAACAGCTAAAACTAAAGGCGGCTTTGGATGAATTAAATCAGCAAGCAGCAGCGACATTGCAAGCTGAAGATAAGGTAACAGCTTTTGAAATTTGGAACCGCGAAATACGTTTGCGACGTTATTTGGGTACAATACCCGAAATTCAAGCTTTATCTAGGGTAGGTGCGATCGCATGGAATCAAAATGACCGTCAGCAGTTATTTTATATAAATCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCAAACCACTTCCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 9 4291641-4292699 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =========================================== ================== 4291641 34 100.0 37 .................................. CCGTATGAAGTTCATCTGCCACAAACAGACGAACAGA 4291712 34 97.1 38 ....T............................. CTCAAAATACACCAAAGTGTTTTCCCTGGCGGTTTAGC 4291784 34 100.0 40 .................................. CGTTTTAGATTCAGAACGGGTTAGAGAAATCAATGCTCGT 4291858 34 100.0 40 .................................. CGAACATTCTCAACAACATGTTGTTGAAGCAGTTGATACT 4291932 34 100.0 39 .................................. CGGTTATGCTGATAAAATGTCCACGAACTTTAACACCGC 4292005 34 100.0 39 .................................. CTATTGCGTTTCCGAAGTGGAGATAGACAAAAAATTACC 4292078 34 100.0 39 .................................. CTCCATGTCGCTTTCTTTTGTGACAATAAGAGGATAATG 4292151 34 100.0 39 .................................. CTTGGGTGAAAGCTCAACTGGCTCGTCTAATACTCTACC 4292224 34 100.0 40 .................................. CCCTCGCGGAAGCCCCCGCGCTTCCCGAAGAAGTTCCAGT 4292298 34 100.0 40 .................................. CGAAGTAGTTGATAGCAGTAAATTACTATCAGGGCATATT 4292372 34 100.0 40 .................................. CGCTTCACTTCGTATTCTGGAGCAGTTTGAGGAGGCGCTA 4292446 34 100.0 37 .................................. CAGAATACTCACTTCAACTAAATATTCCTCAAGAAAA 4292517 34 100.0 38 .................................. CAATTCGGAAAAGTGGGGTCAACATTGATCCTCAGCAC 4292589 34 100.0 43 .................................. CCCGGTGTTGCTGCCCAGACCACACCCCCTCCCAGGGGGGAGC 4292666 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =========================================== ================== 15 34 99.8 39 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : TGGCAACGCCGATTTTGGGAACATCAAATTAAAGATGAAGTTGATTTTATTCGCCATTGTGATTACATCCATTACAACCCCGTTAAACATGGATATGTCAAAGCACCTAAAGATTGGCAATATTCCAGTTTTATGTTGTATGTACAGCGAGGAATATATCATATTGATTGGGGTGCAGAAGAAGATATAGAATTTCCACAAGACATAGGAAATGAATAATATTCGTAGGTTGGGTGCAGGCGCACAAAAAATATTGAAAACACACAGCAAATTTATATTGCGCCGTAACCCAACACCAAATCATCATAATTTTGAGAGAATATTGCCACAGATAAAATAATTGCAGCGTGGATTTTAGCGTTTGAATTAAGATATTTTGGTAGTTGAAAATTTTGCCTTTTTCTTCATAGCATTTGTTGGGTTCCACTTCGTTCCACCCAACCTACAAGATCTACAAGATCAGGCGATCGTACTTAGATATTTTACATCGCCTAAGCGGT # Right flank : ACCCTACTCTTTTAGAAGCCTTATCCAGAGAGGGTTAGAAATACCAATTTCTGAGGGGGTCTAATTTACCTGTCAATAAGCTCAGACTATTGAGAATAGAAGGTCATTAGACCATACTCAAAAGCTTACACAGTCAGCTATCTGAGGGGGTCAACGAAAGAATCAGGTTTTGAGCGATCGCCCGACCCCCTCAGATCACAAAACTTTACATTTATTTTTAGCTATTTAATTGTCATGGTGCAGATGATTTTGAATGCGCTTAAATTATGTTATTTGAAGTGGTTATGTGTCAAACTTTTGATACAAAATTTTAGATGTGATTTTGGCGATCGCATTTTATGATATCTTGAGTCGACTGATTTAGATTTTGCCAGGCACCAAAGATGAAAAGAAATAGGATACAAAGGCAATTAGCTATGTTTTAGCTAAGGTTAACTTAAGTGATATCCTAAATTACTCATCCAAAATTATATATGGCGGAAGAATTAAATTTTCAAGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 10 4563956-4567063 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4563956 37 100.0 32 ..................................... AGAATTTAAATCGCCGCTACCATTAGCAAAAG 4564025 37 100.0 37 ..................................... ATGCAGAAGTAGGAAACAGAATTGTTTTACCTAATAA 4564099 37 100.0 34 ..................................... TATTAACAGTAATAATATTAAAACTAGTTTTAGC 4564170 37 100.0 39 ..................................... TTACTAACGCTGGCTCAAGTATTTGTTTGAGCCTTTGAT 4564246 37 100.0 37 ..................................... CTCAACCTTGATTTGCACTAAAGCACCCCATCTTTCT 4564320 37 100.0 41 ..................................... GTAGCAGCCCAACAAGGATTGAAGCAAACAAAACAAATTAC 4564398 37 100.0 34 ..................................... GAGGGCAAAGTCACCAAACCGAACGGTGGTGAAA 4564469 37 100.0 38 ..................................... TTAAAGTCTCTACTGAAGCATACTTTTCTGGCGTAAAA 4564544 37 100.0 36 ..................................... AGCAAAGCCTTTCCCAGCTAACTTGCATCAAATTAG 4564617 37 100.0 34 ..................................... TTGGAACATCGCCGTATTAAACCCAACCCAGCTA 4564688 37 100.0 33 ..................................... TGTTGCAGAGATGAATAACAAATTCTCTGCCAG 4564758 37 100.0 39 ..................................... TATGCCCTTTGAGGATTTCATTTTTTTCATCAATAACTA 4564834 37 100.0 35 ..................................... ATCGGATCTACTTATCAGCAAAAGCAGCAAAATAA 4564906 37 100.0 37 ..................................... TGTTGGTTTAGCTGCGGTGTAGCCTCCGCGGTCGCCA 4564980 37 100.0 38 ..................................... ATAGATGCAAGGCCTATCAGGAGGCTAACTCTAGTAGA 4565055 37 100.0 36 ..................................... TTCGGATAGCACAGCATTGCAGTTCATAAGTACCAA 4565128 37 100.0 36 ..................................... TGCTGCATCGCTGGGCATTGTATTTATAATAAACTT 4565201 37 100.0 35 ..................................... TACCAGTACATGAGCGTCCCCGGTGGATTGAGAAA 4565273 37 100.0 34 ..................................... GAGAATATCGACCATTGCCCGACCAGTCAAAATG 4565344 37 100.0 36 ..................................... TTTCCTGAGCCGCACCTAAGCGGCTTTTTATTTGAT 4565417 37 100.0 34 ..................................... GCTTACCTGTAAAAGTAAAATATTTAGGACAAGC 4565488 37 100.0 34 ..................................... TACCGTAAACAATATACCATAGCGTGCAACACAA 4565559 37 100.0 34 ..................................... TTTTCACCTTGAAAATAAGACACTTTTGCAGCAT 4565630 37 100.0 35 ..................................... ATCTCCAGTTTGCCAGCCCTTACGTCCAATTAACC 4565702 37 100.0 34 ..................................... AGATACTATCATATCTAACTCTTTAGACGTTAAG 4565773 37 100.0 34 ..................................... GGTTAGTTTCAGCATCTTCCTTGCTTACTAAGTC 4565844 37 100.0 34 ..................................... AATTACGGATACGAGCGTATTCGCAAATTAGAGA 4565915 37 100.0 36 ..................................... ATTGACCAAGCAAACAGGCGATCGCCACCTCAATAT 4565988 37 100.0 38 ..................................... TAGTCATTTGTTTGTAGTTTGCAAGTATTTTGATAGTG 4566063 37 100.0 38 ..................................... GAGGCTGGTTGTGCTGGAGAAAGTAAACTTGTCCAGTT 4566138 37 100.0 35 ..................................... ATTTCATATTTAGTAATGCCTCCAGTATCTACTCT 4566210 37 100.0 34 ..................................... TTGATTTGCGATCGCATTCACAAGTGGCCTGCAT 4566281 37 100.0 40 ..................................... AAATTTATAATCTTCATAGGCTTTGAGAGCTTTAATCGTT 4566358 37 100.0 35 ..................................... CTCAATTTCTGCTTGTCTTTTGACAGACAAGCCTG 4566430 37 100.0 34 ..................................... AGCTATAAATATCGCGTATGACATAGACGCTGAA 4566501 37 100.0 36 ..................................... ATAAACAGGTACTTATAAAGCTTTCCGATGATTAAA 4566574 37 100.0 39 ..................................... TCTTTGAAGTACAAGACACTAAAGGAGGTTTTTTCTAAG 4566650 37 100.0 42 ..................................... AAAAATTAATATCGTATCTAAATATTCGTTTTGTGGTAGGTA 4566729 37 100.0 37 ..................................... ACGCATGGGAATCATGCCATCGGGGAATAGTTCTAAG 4566803 37 100.0 34 ..................................... AATGCGAATTATGAAGACTATCACGAACTCAGAC 4566874 37 100.0 40 ..................................... TTTCTAATGATGAATTTTCTAAATTGCGTAAACACATTAA 4566951 37 100.0 39 ..................................... CGGTATATACAGTGTCGCCAACCTTGCATTGAAACTGGT 4567027 37 91.9 0 ................................C..TA | ========== ====== ====== ====== ===================================== ========================================== ================== 43 37 99.8 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CAAGAACAACCTACATCCGAAAGGTTTGCTGAGACAGCCTTACTTATGTATGATATGCTGACCCGAATCAAAGACTCAACATTACCAGGAAGACCAAGCTTAGGTTTGCGACAAGTGCAAATTAGTGTAGGTGAACCAATTTCCGTCACCGAACGCTGGAAAAAAGCGCAAAATAACCGTCATGCAGCCAGACAAGCAGCCAGTACTTTGACACAAGATTTGCAGACAGCATTGGAGAATTTGATTAGTTAATTTATTGTTGATTTTGACCAAAAGCGCGGATGGGTAGGTGTAGAAAATTAGCATTCCGCAAAAATGGCTGTATTCCTTTCAGCGCAGGGTTTTGCAGAAAAAATAAATTAAAATCGTCCGCGCAGATTATTCTGCCTGGGTTTCAGAGATTTCACGCAAATCAATTGACATTATCTGGTGTTATAATTAGCCCATCCGCGAAATCGAACCTTGAAAACCAAATACAGACCGCCTTTCTGGCTCCCGCG # Right flank : ATAATTCAGTGAAGCATTTATTATTCTCTTTGTGTCCTTTGCGTCCTTTGTGGTTCGTTTAAAAAAAGAGTTTTAACCTGCACTAAACTCTATTAGCATTTAATTCTTTGCGCCTTTGCGCCTTTGCGTGAGACTTAAAATTATTCTTTTCCAAAATTCAAATATTTTGATATTGTTGGGTTACACTTCGTTCCACCCAACCTACATTTTTATTCTAAAAAAAGAATCAAGAATGTTGGATAATTGCGGGATGATATATCTCACGCAGAGGCGCAGAGAGAATAACGAGTTTATTGACTATTTAACATGAACAGGAAACACACCCAAAGCAATCAATCTGGCGGGTAAGTCGCGCAAAAATGGCAAACGTAAAAACCCTGGGGGTTGAAAAGTGCCATTAGTAGATAGTACTGGGGCAAATACTCGCTTTTGAATTAATGTCTGAAATGCTTGGATGATGCGTGTGGGTAACCCTCGTTGACGCTGCACTTTGGCTAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 11 5566325-5568673 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 5566325 37 100.0 34 ..................................... GCATAAATGGATTATGTGAAAACTGCTCAGATGC 5566396 37 100.0 33 ..................................... ACGACCCGCTACACCATTACGCCCATCTGTACC 5566466 37 100.0 37 ..................................... CGTAAATAGTTTTACTTATCGCATATTTAACGTAAAG 5566540 37 100.0 35 ..................................... CATATCTAGTTACGGTGTACTTTTCTACCCAGTGT 5566612 37 100.0 41 ..................................... GTTCTAGTAAGTCCTTGCCCTTGCCGTAGCGTTGCCCGGTA 5566690 37 100.0 33 ..................................... GGCGAAGCCATCGCGGTTCTACGCGCCAGAATT 5566760 37 100.0 40 ..................................... TATTTAGGAGTTAGTGTACCCTTCAGCAAGTACTATGATA 5566837 37 100.0 42 ..................................... GTCTGTGGCGTAATTGATATAGTATTTTCAGTAATGCCCAGC 5566916 37 100.0 36 ..................................... CTTAGGACTACACTGGATACAGAAAGCAAAAAGGCG 5566989 37 100.0 37 ..................................... ATTCCAGACTGGGCTTGTATGGCTTTTGATCCAGTTT 5567063 37 100.0 40 ..................................... TGATGACTACACCGCTACGAACCGCATTTTAATTTATGAG 5567140 37 100.0 38 ..................................... TTGCTAATACTGTTACGTCAGCACTAGAGATGTTTAAA 5567215 37 100.0 40 ..................................... AAATGTCACTTCTTCTATGTATTTAATAAGCTCTTTCTTG 5567292 37 100.0 37 ..................................... AGCGTGATAACTTATCATTGTGTGTCGTAACTGATAT 5567366 37 100.0 33 ..................................... GCTCGCCTAAAGCCTTCACAGGTACCTATTGCT 5567436 37 100.0 34 ..................................... CCATTCCATTGTTCGATTTCCATATAAGGGCGTT 5567507 37 100.0 33 ..................................... AGCAAGTTTACAGGCTCTTTGCCATACTCTGAG 5567577 37 100.0 37 ..................................... TGAATTCCCTCATCAAAAGCAGTCTATATTTTGTGAA 5567651 37 100.0 39 ..................................... TGATGCGATCGCCTCGGCATTTATGTATTGAATGATTTG 5567727 37 100.0 43 ..................................... AGAGGATACGTCTACAAAGGTGTTGTCACTGAACTAGCCGAAC 5567807 37 100.0 35 ..................................... GGCGACACACTAAAAGCGAAAGTAGAGGAACTACT 5567879 37 100.0 42 ..................................... GAAGCAGGGTTAAAAAGGCGGCGACTGGCTGAGGCTGATTTA 5567958 37 100.0 35 ..................................... CCTTTAAAGTTTCTGCCATTAATCTTTTGATTAAT 5568030 37 100.0 38 ..................................... TAATAAGTTATTTTGGGTTCCCACTTATTAGTAGTTTC 5568105 37 100.0 47 ..................................... CTGGATAAATCCAGGACAGAAGGTTGCTACTCCATAAGAAATCACGG 5568189 37 100.0 43 ..................................... TTTAAACCCCCGCAGTCGCCCCCAATCCCCCTACCCCCAAAAC 5568269 37 100.0 36 ..................................... TTAACCATTTCTGTGAAGCTGAATAACATGATGAAG 5568342 37 100.0 32 ..................................... CAATCGCTCAAGTATACATCCGCACTCTAGGG 5568411 37 100.0 33 ..................................... AAAAATTCCCGTACCCCGTGGCACTATTTTAAA 5568481 37 100.0 43 ..................................... CTAAAAGGCCATCGTCACATTTCCCACGCTGTAGCCGTTGTTG 5568561 37 100.0 39 ..................................... GATGGTGTAGCAATTTCGGTTGATTCTTTACCTTCTCAA 5568637 37 73.0 0 A..GC..TT.....G.........C...A...C...A | ========== ====== ====== ====== ===================================== =============================================== ================== 32 37 99.2 38 GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATTTCTGAACAAGCTAAGTCGCTTTATACAGAGTTACTCAGCATTGCCGATTTATCTCAACTACTACCAGATGACTTTGCCATAATTCGGGAATATTTGCAGCGACGCGGCGCAATGGCAGCTAAATCACGAGTTGCTCTTGCTTCTAAGTTAACTCAACAAGTTGCAGCTATTATTAATTTAGCGCAATTGCCAGAAGTTCCCCCTGATGTATTTCTAGAGGCTATTTACTTAGCTTATCAACACAAAGAATTTTAGTATTTTCTCTGCTGGCGGCGCGGATGGGTAGGTGTAGAAAATCGAGCTTGAAGCAAAATCGCTGTATTCCTTTTAGTACAAGCTTTTGCAGAAAAATTTAATTAAAACCATCCGCGCACCTTACGCAGTATACATTTCAGCTATTTTCGTTCAATCAACTGACTTTTACTTGTGTTAGGATCAACCCATCCGCGAAATCGAACCTTGAAAACTACATACAGTAAGCTTTTCTGCCTCCCGCA # Right flank : ATAATTTTTCTCGAACTAATGCCTCATCTTTAAAACCAATAAAAACGGCTGTTCCATCTTTAACAAAAAGCGGACGTTTGAGCAGCATAACATCAAGTGCAAATGCGTCAATCCATTGTTGCTCAGTCCAAGTCTTTTTTTCTTCTCCTAAAGCGCGGTAAGATTGCCCAGAGGTATTTCGCATAGGAAGATAACCCAAGGATTTTACCCAATTTTCAATTTGCTCACGGGTAGGTGGATGATCTTTAGTATTGATAAACTCATAGTCAATTTGGTTGTTTTGCAGCCAAGTTAGAGCTTTTTTACAAGTACCACAGTTAGGAATGCCGTAGATTTGAAGAGACATAAAAGAAGTTGAGCAACAGATTCCAGATATAACATTAAGAGACCATGATCAACAGGACTTACGCAAAGACTACGATTTTATTTCATTACGAGCATTTGCGTCCCTTAACTAGCTTACCGCCATCAAAGCCTGATATGTCCATACCGATTGCCTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACATCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 12 5768108-5766301 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 5768107 38 100.0 37 ...................................... CTAGACCAGCACTTTCCAAAGCTTCAAAAATTTGTGC 5768032 38 100.0 36 ...................................... CAAAATTTCACGTTGGCTCTAACAGCAACTGAAATG 5767958 38 100.0 34 ...................................... TGCTGTATACTCTGCTCGAATTGATAACATTAAA 5767886 38 100.0 35 ...................................... TTCTCGCATCATTTTTTCTGCCGCTTCACAAATCA 5767813 38 100.0 35 ...................................... GTTTTGCAACGCCGGGTGGAGATAATTTGGTGGGA 5767740 38 100.0 36 ...................................... CGTAATCACAAATTGGCGAAATCAATATCTGATGTG 5767666 38 100.0 36 ...................................... TGCTGTAATTCCTTTGCGGACACAAAGAGAATCAAT 5767592 38 100.0 34 ...................................... CCAGAAGGGACGGCATCAACTTCTTTGCAATAAG 5767520 38 100.0 35 ...................................... TTCTGGAGCAACATTGGCAGCACCGCTACAGACGG 5767447 38 100.0 38 ...................................... GAATTTTGAAAATGAGAGCGGTAGCCGGAATACCAAAG 5767371 38 100.0 36 ...................................... AAAAGTATTAACGATCGCTTTGTTGCTATCGCTCAA 5767297 38 100.0 39 ...................................... TTTGGTGCTAGTGAATTTGATTTTGGTGAATATGAGGTA 5767220 38 100.0 34 ...................................... TCGGTGAGAGCAAATAGCGGCAAGGGGTTGCCAA 5767148 38 100.0 33 ...................................... ATCGTACCCTCCAAGCGCAGTCAACCGGAGATA 5767077 38 100.0 34 ...................................... GAAAAGCAAACATCATTGCATTGCATCCAAAAAT 5767005 38 100.0 33 ...................................... TCAGATATTACAAGAAACCGCTAAATCCGAGCG 5766934 38 100.0 38 ...................................... AAAACTCAAAGAGACGCATGAACTAGAAGCGATCGCCT 5766858 38 100.0 38 ...................................... CTTGATCCCAAAAAACACACTCTTTGATTTCTGCTGTA 5766782 38 100.0 35 ...................................... AAATCAGCTTAGATGAAGCGCAGCAGTTAGCAAGT 5766709 38 100.0 35 ...................................... TTTTCAGGAAGATTCAACCAAATAAACTCAAAAAC 5766636 38 100.0 38 ...................................... ATAGTTTCACCTTTTGATTCATTGGCTAAATTTTTAAA 5766560 38 100.0 34 ...................................... GAGTAAGTGCTGTGGAACTGGAAACTCTTTCCCT 5766488 38 100.0 35 ...................................... TCTTAATTTCTCTAGCTAAGTTTGCATCTAAAGGC 5766415 38 97.4 39 T..................................... CAATGCTTCACATCTTGAATACGTCGAGTTGATATTGAA 5766338 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================= ================== 25 38 99.9 36 AATTGCAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : AGAATTAGGCGGAGAAATTCTCAAACTCTGTGTAAAAGTGGGTGGAAGTCTTTCGGGTGAACATGGTATTGGCTCAGATAAAAAATGCTATATGCCAGAAATGTTTAACAGCGTCGATTTAGAATCAATGCAATGGGTACGACAAGTATTTAATCCCCAAGGTTTAGCCAACCCTGAGAAAATATTCCCCACACCCCGCACCTGTGGCGAAGCTGCAAATGCGATGAATCACAAGCAGTTTGAAGGTGTGGAAAGATATTAAACACCCTAGAAATTCGCGGATGGGTAGGTGTAGAAATTCAGGCTTGAGGAAAAATCGCTGTATTCCTTGTGGTGTCTGCTTTTGCAGAAAAAATAAATTAAAATCACCCGCGCACCTTATACAGTATATCTTCCAGCTATTAGTCTTAAATCAACTGACATTTTCAAGTGTTATAATTAACCCATCCGCGAAACTGAACCTCGAAAACCAAATACAGATTAGCTTTCCGGCTCCCGCG # Right flank : TCATCGATGGTGCATATCTACCAATCACCCGTGACCTGAAGGGGTGACAAAAAAGTTATAAAGCAGACTGGATAAGAGTCATAGCCCGTAGACCTTGTTGAAAATATGGCAGCTGAAGGGGTGACAAAAAAGTTATAAAGCAGACTGGATAAGAGTCATAGCCCGTAGACCTTGTTGAAAATATGGCAGTTTACTGGGCTTGAGGCGCATCAATTCATGAGCTAAATCAGCCCAAAATTCCATTGCCCCTACCCATAACTGACCATACAAACCAATCCAAAAAGCACTATGTCGGCGGTGCAATCGTTGTAACTCCTTCAGACGACCAACATATTTTTGTAGTCCAGAGGAGCGAGAATTACGACCAACTAAAATAGCACAAGTATAGGCAATAGCAATTAATAAAATCAGTGCTATCAAACGTTGACCATCAGCATAAGTAGATTCGAGATTATACCCTCCAGTTTTACAATCTTTAAACATGGCTTCGATACCACTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 13 5817107-5818597 **** Predicted by CRISPRDetect 2.4 *** >NC_019676.1 Nostoc sp. PCC 7107, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5817107 37 100.0 35 ..................................... ACATGAACCAAGCGGACTACCACAGGGGGCAACAA 5817179 37 100.0 40 ..................................... TTTATTCTGAAATTATATTTAACTTTAGCCATCAGATTCT 5817256 37 100.0 41 ..................................... ACCCAACGGGGTTCCTTCAGAACTAACAAAACAACGCGGAG 5817334 37 100.0 38 ..................................... AAAAATATAAGAATCAGCAATGGTAGGAAAACCAAGCC 5817409 37 100.0 37 ..................................... TCGTTTAGCAAGAGTTATTGATGATGAGACTCAGGAG 5817483 37 100.0 33 ..................................... CATGTGTATGTCCGTGCAGGTGAATGCTCTTGC 5817553 37 100.0 34 ..................................... ATCAGTTAACAACTGTTCACTGTTTTAGTCGGTA 5817624 37 100.0 35 ..................................... ACAAATTCTTAAACGGTCGACAGACGCGATCGCCC 5817696 37 100.0 34 ..................................... CAGATTCAAGTGAGCGTGTTACTCAAGTCGCAAA 5817767 37 100.0 34 ..................................... TTCCGCTAATGAGTTGAGGCGATCGCCTGAGATA 5817838 37 100.0 36 ..................................... CTTTGGAGCAATGGATTTGGCATAAAGCCGATCATA 5817911 37 100.0 34 ..................................... GAGCGTTCAGGTAATAAATATTGGTATTACCGCT 5817982 37 100.0 34 ..................................... GAGTGGATAGCGTGGTGTATGAAAACATACAACT 5818053 37 100.0 35 ..................................... TTTATTAGTATCTATATGAGTGTAGATATCAGCTT 5818125 37 100.0 36 ..................................... ATTCTGATCCTGGGTAAATATACGATTTAACGCAAA 5818198 37 100.0 39 ..................................... TAAAGCTAGAGTGCCAATTTCAGATAACTCTAAATCTAT 5818274 37 100.0 36 ..................................... GAGAAAAGTTGGACTAATTCACCTACATCAACAGCC 5818347 37 100.0 35 ..................................... TGAGTATTTTGCTAACGATACTGCCAAAAATCAGT 5818419 37 100.0 34 ..................................... CAATTAACCGCTTGAACTGTTTTTTGAAGGTTTC 5818490 37 100.0 34 ..................................... ACACAGCAGAAGTCAATAGAAAAAACATCTGAAA 5818561 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 36 GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC # Left flank : TATATTCTCGGAGGAACAGATCAAGGCCTAGAAGTCAGAGGAAAACAGTATCGATATTATGACGAAGAAGGAAATAAAGAATGGAACCCAATTTCTGAGTTAAATTCCATCAAAGAAGGCTTGGTATTTGATGGACAGAATTATTGGTGTATTCCCCCAAGACGGGAAATCGGAGTATGCTCTGAAAATGGCTGGATTCCATCAAGATAATTTTTGCCTTCGCTCTGGAAATTTTGATAGGATAACCCGAACACCATAAAATTTCTGTCCTAAACGCGCGGATGGGTAGGTGTACAAAATCGGGATTGCAAGGAAATCGCTGTATTCCTTTCAGTGCAAGCTTTTGGAGAAAAAATAAATTAAAAGTATCCGCGCTCATTGCCCAGACTGTATTTCCAGTATTTGGTGTCAATCAATTTTAATTTTTTGATGTTAAAATCAATTCATCCGCGCAATCGAACCTTGAAAACCAAATACAGATTAGCTTTCTGGCTTCAGCA # Right flank : CCACCGCGTGCGATCGCATCTTCGTAGATGAATCATTGTTAAAATATTATTTGAATTTTAGGCGTTGTTATGAAAACCATTGGCATTCATCATATAGCGATTATTTGTTCTGACTACGAAAAATCGAAAATGTTTTATGTAAATATTTTAGGTTTTGCGATTATCAAAGAAACATTTCGAGCCGAAAGAAATTCTTATAAATTAGATTTGCGTATTAATAATTATACTCAAATTGAGTTATTTTCTTTTCCCAATCCTCCCAAGCGATTAAGTAATCCAGAAGCTTGTGGCTTAAGACATTTAGCTTTTTGTATTGAGAATATAGAAGAGACTGTTGCGTACTTAAAATTGCATAATATAGAGACAGAAAATATTAGAATTGATGAAGTTACAGGCAGAAAATTTACTTTTTTTCAAGACCCAGATAACTTGCCTTTAGAGATTTATGAGGTTTAAGAACTATTATTTTGTACCACCACCAAAATAATGATCATCTTCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTTCTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //