Array 1 460859-462411 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWU01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4627 NODE_3_length_725489_cov_81.664513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460859 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 460920 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 460981 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461042 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461103 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461164 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461225 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461286 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461347 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461408 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461469 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461530 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461591 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461652 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461713 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 461774 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 461835 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461896 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 461957 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462018 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462079 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462140 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462201 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462262 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462323 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462384 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478726-479243 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWU01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4627 NODE_3_length_725489_cov_81.664513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478726 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 478787 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 478848 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 478909 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 478970 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479031 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479092 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479153 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479214 29 93.1 0 ............TC............... | A [479241] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //