Array 1 231668-233281 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAO01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B301 NODE_2_length_410959_cov_98.516967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231668 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 231729 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 231790 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 231851 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 231912 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 231973 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 232034 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 232095 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 232156 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 232217 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 232278 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 232339 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 232400 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 232461 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 232522 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 232583 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 232644 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 232705 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 232766 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 232827 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 232888 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 232949 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 233010 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 233071 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 233132 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 233193 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 233254 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249414-250053 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAO01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B301 NODE_2_length_410959_cov_98.516967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249414 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 249475 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 249536 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 249597 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 249658 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 249719 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 249780 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 249841 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 249902 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 249963 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 250024 29 96.6 0 A............................ | A [250050] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //