Array 1 31819-36192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000019.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 31819 24 100.0 41 ........................ GTTAATTTTTCGGATTCTTTACGATTAGGTTTTAAAGATTT 31884 24 100.0 40 ........................ AGGAGATTGCAGTTGATAGGGTTCAGTCAAAGATAATTAT 31948 24 100.0 43 ........................ GAACTTTTATCGAATCCCTATACTTCAACACGCCGTAACGCTT 32015 24 100.0 40 ........................ ACAGAAAGATTCGATGTAGTGACTGGGTCACCGCCCTGTG 32079 24 100.0 40 ........................ AACTTAGTTAAAGATAGTGAACTAGAGGAAGGTGATATAG 32143 24 100.0 42 ........................ GTTGAGCCTCCAGGCCATATTCCCTACTCTCTCTATCCTCCT 32209 24 100.0 40 ........................ GATTCTGTCATATCTTGTATCTTCACGAAGGGAATATTCC 32273 24 100.0 42 ........................ ATACTCTATTACATTAATTATAATAAGTACGGTATACGTAGA 32339 24 100.0 39 ........................ TCTGAAAGTTATCTTTATCGTCTGACAAGCTAAAGATGA 32402 24 100.0 44 ........................ ATTTTATATTCTTCAATGCATTCATGTAAGTTTTTTTATTTATG 32470 24 100.0 37 ........................ ATTGCTTTGGCTGCAGTGCTTTTCTTTACGATTACAA 32531 24 100.0 41 ........................ TTATGTGAGAATTTTCTGCCATCTGTTTAACTTCGTCTTTA 32596 24 100.0 41 ........................ CTAACAAATCCAAGACCAAACCCGGTGAGTCCTAAAATTTC 32661 24 100.0 40 ........................ GTTACCATTAATCAGTATCTCTGTATGGTGACACTGTCCA 32725 24 100.0 39 ........................ ATTCTACTTAGTAGATTATATGCCTCCTGGACTACCGGC 32788 24 100.0 38 ........................ ATAATACTTGCTAAGCCAAATTGACGCATCATCGAAAA 32850 24 100.0 40 ........................ AATGCTCATCGTGTTTTGGAGTGGGTTTCCCACAATGTCA 32914 24 100.0 42 ........................ CATTATGCAGGCTTTACCGGTCGACCTCATTATTTTAATTCC 32980 24 100.0 38 ........................ CTAACTAAGAAGAGCTTATCAAACACCTCACCTATAGG 33042 24 100.0 42 ........................ ACAAATTGTGGAACTGGCATGCTTGTCATATTGGTTAATTTA 33108 24 100.0 44 ........................ GAAGTTAGGGTCTCTGTTAGGGTCTCCTATCGTAAAATAGAAGT 33176 24 100.0 40 ........................ TTAACCAGAGTCCCGTTTATCAGAACGGGTTCACTTGTAT 33240 24 100.0 44 ........................ ATTTAGGTATGCCAGTCTCTACTAAAAACATTACAATTCTCTTC 33308 24 100.0 40 ........................ TTTATTACCTCTAACCTCTTTCTCTCTTCACTATCTAACA 33372 24 100.0 40 ........................ TTTTGTATTGTACCGCTTTTCTGAAGTCCTTATCACCCCG 33436 24 100.0 44 ........................ ATTTGTATAGGTTGAACGGGGTTCAACGGATACTCGAAACGTTT 33504 24 100.0 41 ........................ CTCAAAGTGACTTTGAGCAATGAATTTGACACATTTACAGA 33569 24 100.0 40 ........................ GTTGTTGCTCTGTCCCGCATTCAACGTCACTACAAACCTG 33633 24 100.0 40 ........................ GAAATCAACACCTAAAACAGATGTTTTAAGTGTAACACAA 33697 24 100.0 41 ........................ TCCCTTAATGATCTCAATAAATCAGTCAATTGCGTAGAACT 33762 24 100.0 41 ........................ ACTGTGCTAACAACTCGGGCTCAGGCATATCATATTCGCCT 33827 24 100.0 39 ........................ GAAAAAGTTAAAGAAGAAGCAATGAAACAGTTTTCCTTC 33890 24 100.0 42 ........................ TATCTGCAATGACGTATGGAATGGGCAAACGTTGATTAGCTT 33956 24 100.0 39 ........................ TATTATTGCATGCTCTCTAAAATATCTGATATTATGTAC 34019 24 100.0 40 ........................ AGAAGAAGTTTCGAAACGGTACGAAGGAAATCTCATTACC 34083 24 100.0 38 ........................ ATTCTTTTATGGCACTTAATAGAGTTTCTTCTGGTGTT 34145 24 100.0 40 ........................ GAAGTAATGATGTAAGGATATTGAGAACTATACCAGCTAC 34209 24 100.0 40 ........................ CAGATCTCGCAGACGCCCTTAAGAAGTTTGCTGAGGGCTT 34273 24 100.0 41 ........................ ACGAGATGACCACAGGAGTTATCACAAATGAGAATAATGAT 34338 24 100.0 37 ........................ GTGAATAAGGAAAATTTTTTCTGAATAGCTGTTCCTC 34399 24 100.0 40 ........................ ATGATAACTACATTTCCCATTCGGAAGACAGTGCTTTTGA 34463 24 100.0 42 ........................ TCACTCCCTTCCCCTGACCCCCCGCTGATTTGAAAGGATTGA 34529 24 100.0 42 ........................ TTAATTTATTGCCAGACTGCCTGTCCTTTTCAATTATCTGGA 34595 24 100.0 43 ........................ GAGTATCCTTCTGACTCATATTCACCAGTGATATGGATATCTG 34662 24 100.0 46 ........................ TACTTCTTCTTAACGAAAAACTTATATTCCACACAGGCCCAAGCTC 34732 24 100.0 43 ........................ TTGAGGTAAGTCTCTGCGGAATTCACTATCTGAACTACTGAAT 34799 24 100.0 39 ........................ CAAGAAATTTAGCTAAAACATAAAATGCGATGGCATCAG 34862 24 100.0 41 ........................ TATCTGAGCGTCGAGGCGTCCTGAACGTCTATTAGGTATAC 34927 24 100.0 42 ........................ GCCTTGGCCATAGCAGAAACTATTATCCGCCATCTGAAATCC 34993 24 100.0 44 ........................ GTAGTATATCATCCATATTAGACTCAATCACGTTGTTAGCTTTT 35061 24 100.0 42 ........................ ACTCCACTAGCCATCCCTACTAGGCTGCTTAGACCCCCAGAC 35127 24 100.0 40 ........................ TCAACATATGATGGGAATAAATGGATTCGTGCTTCTCCAA 35191 24 100.0 41 ........................ TTAACGACTCCCTCAAGGTGTTCACTACGTTAAAGGCCTGG 35256 24 100.0 40 ........................ TATACCACTGAAGGCCTAAGAGATTATAGGAATCAGTATA 35320 24 100.0 42 ........................ CTTCTTCATCAACCACTCTTCAATCTCCTGTAAAGAAAACTT 35386 24 100.0 40 ........................ AAAATCTATTGTAATATTTTTGAAATCAACACTAATATAA 35450 24 100.0 44 ........................ ACCATAAATACAACTACAAAAGTCTATGTTAACACTGGGAGTGG 35518 24 100.0 42 ........................ TTAATGCCACAAAAACTAGAAAAAATGCCTTACACTTTCAGA 35584 24 100.0 41 ........................ GATATTCGATATTCTATTATGAATTCATCTCCTTCATCATT 35649 24 100.0 37 ........................ TAGAAAGTGCTACTGTAGGCCCATATCCACCATGCCA 35710 24 100.0 40 ........................ CATTCTTGCCGGATTAATTCTAATAATTTTTATAGTACCA 35774 24 100.0 44 ........................ ATTTTCGATGTAGTGACAGCATTTTTATCAGACCTTAACCTCAC 35842 24 100.0 41 ........................ AAAGTCTACTTATACCAAATTGATAAATGGTTTGTCAAACT 35907 24 100.0 44 ........................ TTCATCATCAACACTGATGTAGCCCCTTTTCTTAAACTCTAGAA 35975 24 100.0 41 ........................ TCTTCCAACCATACCGCGATAGGTCTAAATGATTCATTAAA 36040 24 100.0 40 ........................ ATTATTAAGCCGGGATTGCCAGAAATTGCCGCCAACTCGT 36104 24 100.0 41 ........................ ATCTAATAGACAATTCCAGATTAAACGTATAACTAATCCGG 36169 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 68 24 100.0 41 GATAATCCTTAATGGAATTGAAAG # Left flank : ACCTTGGGTTTTTACTGTTCTAATATAACGTTTGATCTTCTGTTTTTCCGTATCAATAGATGAAATTGCAATATCATTGGCACCATTTAATTTTTGATTCTATCTCTACTGTTGAAGTTCTATTTAAAAAATTGTTAACTTAAGGAAAATATTATTACCTAGTAAATCATCTAGTTTTATCTACTAGATAATGTAATTTATTTTATTATTTAAGAGAATTTCTTGATTTTATAAAGTTAAATAAAATAAAGACTATATGTTCTATAAAATTTTGAGTATATCTTTGTTGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTGTCTCTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGCAGAAACGAAGAAAATAACATAAGAAGTAATATAAAAACAATCA # Right flank : ATTAAATGTGGGTTACTCCGCCCCTTCACGGTACTCCCAAAATCACCTCCTTAAAAATAAACCTGTAGTATTAGTAAGCGTTTCCTCTGATTTATTTAAATAAATCTCTGCCTCAGATATATTTTCAATAATTTTTGAAATTAGTGATTTGAAAGTCCTCATTTTCACGTTATCCTTGAGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 39-4048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000028.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 39 25 100.0 38 ......................... TACTAGACAACAGCGGGTCGATGTCATGGTTGGGAAAC 102 25 100.0 40 ......................... TCATGAATTTTTATGTATAGGCTCCCTATTTTTGAAAATA 167 25 100.0 39 ......................... ATTTACTCGATCTAACGAAGGACATGGGTGGTTAGTTTG 231 25 100.0 41 ......................... ATATACTGCAGTACCTTCCCCAACAACCAGTTATAGTAAAT 297 25 100.0 38 ......................... TTTGTAGTAAGGAGTTGTTCCCTCTCATATTTAGGTAA 360 25 100.0 36 ......................... ATAAGATCATCATCCAAACGTTAGCCGATACTTTAC 421 25 100.0 35 ......................... ATATTTTGAACTTGAGCATCTTTTTGCATAGTCAT 481 25 100.0 38 ......................... TGTTGACTATCATTACTTTCAGTTTGTTGTTCATCTTC 544 25 100.0 34 ......................... AATATAACGTAGTCTTCTACGTATGCTTCAAATT 603 25 100.0 39 ......................... TATTCAAATTCAAACGACATCTTACCACCCATATTACTC 667 25 100.0 37 ......................... ACAACAGCAATATTGGTTAGATTTGCACGAAAACGAT 729 25 100.0 38 ......................... TAGTTTTGTCACTTACTTTGTGAATGATTGGGATAAAT 792 25 100.0 41 ......................... ATACGTACAGACACCCTAGCGTTTTGCAAAAAGTCTAATAG 858 25 100.0 40 ......................... TTATTTTGTGTTAAAGGTATAAACGTGATTACTGATTTCC 923 25 100.0 39 ......................... TGTGAACTTAATCATTGTCTCAACTCCTTTGATAAATTT 987 25 100.0 38 ......................... CTCCAAAATCCTGAATTCCTTGAAATTCTCCTCTGAAG 1050 25 100.0 37 ......................... TTCTCTATCATTTGTGTAGAGAAAGATTTAAATAGTT 1112 25 100.0 35 ......................... TACTACCACCATCACCCTACCAATATATCCTGAAA 1172 25 96.0 40 T........................ ACTATTATTTGGACATTTTCTAGTTCAGAATCTTTAACTA 1237 25 100.0 41 ......................... TTTAGATGTTGATATAATTGGCGTAACAGACGTTGAGCGTA 1303 25 100.0 37 ......................... AATGACCCCCAGTTCTGTCAACAATTTCCTAGTTTAT 1365 25 100.0 39 ......................... CAATAGCGTTTAATCTTATCTCGTTATTGTTCATCAACT 1429 25 100.0 40 ......................... ATAAACGTTTAGAAAATGGTATTATTGCTAACGACATATT 1494 25 100.0 38 ......................... GTATAGGTGGCTGAGGCAACCATACAAGCCCATCAAAC 1557 25 100.0 41 ......................... TGTTTTGGATTTTCACTTTTTTTTCACCCAACATCAACATT 1623 25 100.0 38 ......................... TTGACTCGCCAAAAATAACATTTTGTACACGTTACCAG 1686 25 100.0 38 ......................... TCTCTAGGGGGAGAACATTCTCTCCATAGGGGAAAAAG 1749 25 100.0 38 ......................... TCTTAAAAAAGACCATGTCTACCGTCAACTTCTTCAGT 1812 25 100.0 39 ......................... ATTTCTCTCGCCCAGACCAAATCCATTTTTCTACTTTGC 1876 25 100.0 43 ......................... AAGAAGTCGTTAGCGATTTCGTTTAATTCGTCATAGTAATAAA 1944 25 100.0 39 ......................... CACCATGTTTTGTAACATTGCGTTAATAAATATCGTAAT 2008 25 100.0 39 ......................... TATTCCGTTTCTGAAGTCGTATTCTAACGTAACTATAAC 2072 25 100.0 40 ......................... ATTAAAGACAACCCAGCGTTTATCCGCTTCTTAACGATGG 2137 25 100.0 42 ......................... GTTACCGTCTTAATATATAGTTCCTTGAGCTTATCCACTATT 2204 25 100.0 39 ......................... AGGAACCAATATTTTCCTACCTTTCATGTTTACTTGCTC 2268 25 100.0 40 ......................... ATAGCATTAGAAACTGCTTTCCCCATTGCCTTCATTGTTA 2333 25 100.0 40 ......................... AATATGTCGTTCTGGTCACCGTTTAAATCGCTAAATATGT 2398 25 100.0 37 ......................... TTTGACAACATTTACAGCGTAATAACGTTATGTTATC 2460 25 100.0 39 ......................... TTATGATACGCCAAAAGATATGCTAAGAGCTCAATAACG 2524 25 100.0 39 ......................... GAAATCAATCCTTTTGAAGATCTGTTGCATAGTCCATCG 2588 25 100.0 38 ......................... ACCATTTTTAGCTCACCATTTTTTTAATTGGAAATAAT 2651 25 100.0 41 ......................... ATTAAATTAGCCGTTGCTTTACCTAATGCTATTAATTTGAC 2717 25 100.0 42 ......................... ATTGAAACAATGACAGACATCTCGCTCTTGCCATCAACGACT 2784 25 100.0 40 ......................... GATAGAAGGGGAAAAATTTATTTTTTTAAAAGCTGTATAC 2849 25 100.0 40 ......................... CGTTTATATATCGTCTTAATGCATTAACGAAACGTTGAAC 2914 25 100.0 45 ......................... CTCTACATTAATTTCAACCTTACTACTATTCGTTAAATATGCCAG 2984 25 100.0 39 ......................... GGTTTATTCTTAATTACTCTTTCATAAAGTGCGTCTTCT 3048 25 100.0 38 ......................... CTTTTTTCATCGTTAACTCATTATTTATTGTGTACAAA 3111 25 100.0 40 ......................... TCCATTTGGATCTGTCTTTCAATATGGCGTAAATTTCGTC 3176 25 100.0 39 ......................... AAGACCACTTCCCCCGAAACGCGGGGGCTCTATACTAAT 3240 25 100.0 40 ......................... GTGATACAGGTTTAAACGCAATAACTTCCTTGCCATTTTT 3305 25 100.0 40 ......................... TAGTTATTGCAATCCACCATTTTCTATCAAAAAACTATTC 3370 25 100.0 34 ......................... TGAAATCATACAGTCTTGCTTTTAGGGCATTTAG 3429 25 100.0 39 ......................... ACGTTATACGCTCTAGCGAAAAATCCTTTGAAGTCGTTT 3493 25 100.0 41 ......................... ACTAGGATATCGAAAGCGGTACTCCATTCAAATGTCTTCAT 3559 25 100.0 40 ......................... TATCTAGTATCATTAACACTCTAAACTTATATTGCCTTGA 3624 25 100.0 39 ......................... AATTCATTTTTCATTTTCCCCCACCTCACTCTAATATTA 3688 25 100.0 40 ......................... TAAACCTCATCAACCTTGCCATAATATTTTTCAATATACA 3753 25 100.0 39 ......................... TTTCCATCTACATATACACCATGACTATACAATATACCA 3817 25 100.0 40 ......................... GTCGCTTTTACGTTGATTATGCCAGCGTAATATAACCTAA 3882 25 100.0 51 ......................... TGATTTCTTTTGCAATCTCTTGAATATTACTCATTGTAACTCACCTAATTC 3958 25 88.0 40 ...A.....CA.............. TTTTCCAGTTCATCTTTTTCCCGTTAATCTCCTTCATGCC 4023 24 88.0 0 ....-..T................A | A,T [4034,4046] ========== ====== ====== ====== ========================= =================================================== ================== 63 25 99.6 39 GATGAATCCTCAAAGGAATTGAAAG # Left flank : ATAACCATTTCATTATTCTCTTCTGTGAAATAGTCTACG # Right flank : ATATACAGCAAGGGATAAAAGGGTGATAAATAAATTATTACGACAATAAAGAGAAGTTACCAGATTATCTTATCCTCATTTTCCTTAAACTCATCTCCGATCATAATCCTCTGATTAAACATTGCCTGCGTTACCGGTAAGATCATTACCGAAAACCTTCCCTCCTTATTCAACCTATAGAGAACTCTAAGCGAAGCTATAACGTCTTTTAATCTCGCTGAGTTCAGATCCCCAATGAACACACTGTACTGTACCCTGATCAAACCCTTTTTCTTTAGCACATCAGCTACTTTATTTCTCATCCCATCATCACTTATATCATAAAATACTATGTACAACATTTCACTTCGCCATAAAGGGTCTATATTCATCTCCGTGGAGTATTGAGTTTACAAGCCTCCTAGCTTGAGTGTATATTTCGTCCTCATCAAAAACGAAGGTGGAGTAAACCACTTTTAAGTCTTTTAACTTCTCATAGTTTTCTCTTGCAAGTCCTATTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCTCAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 21812-19264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000028.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 21811 25 100.0 43 ......................... TATTGAGACAGAAGGAAGCGGGAGTTAAGACCCTCAAAGAGAT 21743 25 100.0 40 ......................... TTATGGCAGATGATAACTCGTCAATTGCCTCTTCTGCACT 21678 25 100.0 39 ......................... GCTTTACGACGAGGGGGGTCGCCCCTAGTACATCTGCAA 21614 25 100.0 41 ......................... AGATCTTACCCACATCCGCCTCATGTCTAAAAGTAATATTT 21548 25 100.0 42 ......................... TGATATGACTTTCAAAGCGACCTTCTTCCCTACCTCATTTTC 21481 25 100.0 40 ......................... ACACAGAAAAGTAAACCGTTAGTCCCTGCACAAATAGAGA 21416 25 100.0 38 ......................... GTATTCCCAAAGCTTATGAATTCATATTTCACATTTAT 21353 25 100.0 41 ......................... TTCCATATTTCAATGATAGAAAAAATATCAATGTCAATATA 21287 25 100.0 41 ......................... TTCCATATTTCAATGATAGAAAAAATATCAATGTCAATATA 21221 25 100.0 40 ......................... CACGAGCATTAATCCATGTTTTATTTAGAGCATTAAAACA 21156 25 100.0 40 ......................... ATAGAGGACTTAAGGAGTGGTTATGGAAGAATAATTTTAT 21091 25 100.0 42 ......................... GGTATAAGAATAACAAAGAGCACTATACACCGCATATTCTTC 21024 25 100.0 39 ......................... GTATGTCGTTATGAACTACGTTATTGGATTCATCGTTAG 20960 25 100.0 37 ......................... AAGAACAATTTTAGCATATAATCCATTATTGATTATT 20898 25 100.0 39 ......................... AATCCATCTAATTCAATTCAACCTGTTTTTTCTTCAAAC 20834 25 100.0 34 ......................... CCATAGAGAATGTTATAATAGTTGATGATTACAC 20775 25 100.0 39 ......................... ATGATTCCCCTTTGAATGACGTCAGGAAACGTCGTAAAG 20711 25 100.0 34 ......................... TTTTTCTGAGTCTTTATAGCAATACACTCGTTTA 20652 25 100.0 43 ......................... TTAATTCCACAACCACCAATTTCACAACCACAACACCAGCCAG 20584 25 100.0 39 ......................... AATAATTTGATTACTTTATCGTAGAACTCCTTTTCCTTT 20520 25 100.0 37 ......................... AAAAATATCTCAATAATATTGTCAGATGGCACTTCAA 20458 25 100.0 38 ......................... ATAATCGCATAATCCGCAATATAATAACCCATCACCAA 20395 25 100.0 39 ......................... CTCCTTGAGGCACTGTGATATTCTCGGCTCTCGCAAATC 20331 25 100.0 41 ......................... CTTTCTTTTCCTTCTTCTGTTCAAGAAGCTTTATTAGGAAT 20265 25 100.0 39 ......................... AGCTGAACTTCATCTGGAGATATTTCCAGGTCACTGTTT 20201 25 100.0 36 ......................... AGGTTTCTTTGTTGATACCACTTATATAATTCGTAT 20140 25 100.0 38 ......................... TTAAATATCGTTATGTTGATTTCTTCACCTAACGTCTT 20077 25 100.0 40 ......................... ATACGACAACTGTCACCGCCATAACGTTTGACTCTCTTAG 20012 25 100.0 38 ......................... TTAAGGGCCGTTTTCAACACGTCTATATCACGTTTAGT 19949 25 100.0 36 ......................... AGCCAGACTAAAAAATTGAATACATCACATGCATTA 19888 25 100.0 40 ......................... TGTATTGAAGTTCCGTAACATAGTTAACAACCTTTCCGTT 19823 25 100.0 41 ......................... GGTTAATAATAAACAACAATCGAAATATATTAGCATTAGCC 19757 25 100.0 39 ......................... TAATAAAAAATTAGCTTTGACTTGAAACTTGTACTGTTT 19693 25 100.0 39 ......................... TCCCCGCCTTTGGCGGGGTCGATTTTTTATTCTTGCCTC 19629 25 100.0 39 ......................... TTTAAAGCGTTAATAAAGTCGTTACCGATTTCGTTTAAT 19565 25 100.0 39 ......................... GACGTCTTCTTCTTCTAACGTTTCTTCTTCTACGTTTAA 19501 25 100.0 43 ......................... GTACTTCCAATAGGTTCAAACGTTATGATTTCTTTGTTGTTCT 19433 25 100.0 42 ......................... TTAATAAAATCTTTTATTTTCTCTTCATCTATTATAAAGATT 19366 25 100.0 53 ......................... ATTTTACTAAAGTTGCAACTTCTAGTTCCTTCTCGTGCTTCATACTTTTTAAT 19288 25 92.0 0 .........AA.............. | ========== ====== ====== ====== ========================= ===================================================== ================== 40 25 99.8 40 GATGAATCCTCAAAGGAATTGAAAG # Left flank : TATTTGAATGAGAAAGAGATAACGAAAGTTTTGAATT # Right flank : ACAATTAACAGAAGGAACAGAACCATTGGGATAATTTCTAAAGGTTGAAACTCGAAAAGGCAAGATAAAAGGCTTTAGATTATGAAGAGTTAAACCAAATTAGTGATATGAAATTAGAATCCCCACACACCTAGAGATCAGTAAACTGAGAAGTGAGCTTCTATATCTTCCTTCATATTCACTAAATATCGGGATAAATTTTAGAGATTATTCTATAGACTAGCAGTAGTTGAGGGTCAAGTAATAATATGGGTTAATTTAATTTACCTCTTTTAGGTATAAGGAAGGAGTATTAAATGTTTAGAGAAACGAAAAATGAGAATATTTGTTAAGTTCTTTAAAACGAATTTTACAGTATAAGACCTTTGTATCATCATGATTATCGTAAATTTCTATATAATATAAATAGAATATAAGAAATCAATATCATAGTTTCACTTTTTATGTAGATTTTCCTTAATTCAATAAGTTTATATAACTATGCAACACTACGAGATAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCTCAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 5875-1363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000024.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 5874 24 100.0 40 ........................ AGAAAAAGTGATGGAAAATGGCTATAGTGAGTCTGGTCTT 5810 24 100.0 38 ........................ CCGTAGACCCTGCAGTTATTGCGAAAATAACGGGTCAT 5748 24 100.0 44 ........................ AAAATAGGAATATCGTAGCAGAGGGTAATTCATGGGAAGAAGTT 5680 24 100.0 41 ........................ TTATATTATGCTCTATTGTTTATGTAAAGCATAAAGTTTAT 5615 24 100.0 39 ........................ TTATTAGAAGCCTGGGTTCTAAAACCTAAATACCCTGAC 5552 24 100.0 38 ........................ TCCAAACAAACCAACTAAGCCAGTCCCACCCAACCAGA 5490 24 100.0 40 ........................ ATTTTCTATTTGATTATCTGCCGTTAAATCTTATCACTAA 5426 24 100.0 40 ........................ TAATCTCTTTCCTTTTTTCTCATCTCCTCTTCTAACACTT 5362 24 100.0 40 ........................ TTAACATTAGTATAGAGGTATATCCGATATTTCACTCTGG 5298 24 100.0 41 ........................ ATTTCACAGCTATCAAAATAGTCTAGAAATCCGAAAGGAGG 5233 24 100.0 40 ........................ TCTAGCGTAAACGATTGCCAAGGCTTAGGTACTACACTTA 5169 24 100.0 40 ........................ ATTATATTGTGTCACTGCTTAAGATTGCTAGAGAGAGTTT 5105 24 100.0 41 ........................ CTATGCTTATCCAGCTTTCTACGATAACAAGAAATTACTGT 5040 24 100.0 41 ........................ AACTATTGTATAAAATAATACCTAATGATGTTTTTGACTTC 4975 24 100.0 46 ........................ CAAGAAATTATAGCAAAATTTGGAAGACTAAAGCCAAACGGATTAC 4905 24 100.0 38 ........................ TTGCTATTGAACCTTAAGGTTAATGATTTTTCAGTTTT 4843 24 100.0 41 ........................ GTCTATGAGTTCAACATAGTCTTTGTGTTTCTTCTCCCTAT 4778 24 100.0 41 ........................ CTTTGCCATATCTAAGATGATATACTTCAGATACGTGATAT 4713 24 100.0 44 ........................ ATCCTTTGCAGAAGTTTAATTTTGCTCTTTCCACCGGATGCTAG 4645 24 100.0 38 ........................ ACCATTTCGGGCTCTCGCCCGCCCGCTTTTTCTTTTTA 4583 24 100.0 40 ........................ CACAAACTGGAGAAAATGAACAAGTAGAGGGCGAAACAAA 4519 24 100.0 41 ........................ AGAACAGGCTTATAATCCTGGTATCGATATTTTTAGCTCTA 4454 24 100.0 38 ........................ GTCAGTACTCTGATCGCCTACGTTTGGAGAAAAGATAT 4392 24 100.0 41 ........................ GAAATAATTAGTTGAAGAATTATGAAGAAAATAAGTAATGA 4327 24 100.0 42 ........................ TCTGAGAAAGTCATACGGCGCTAAAACAACTGTCTCGCCGTT 4261 24 100.0 42 ........................ TGATGTAAGGTAAATGGGCAACATTTTGAAATTCATCGATGT 4195 24 100.0 41 ........................ TTTCTAATGGGACGTGGTTCATTTCTGTGTCGCCTTAGTAA 4130 24 100.0 43 ........................ AACTTATAAGGAAAGCATTAGATGAATATTTAAAAAATCATTA 4063 24 100.0 44 ........................ GGAAAATACATTATAGTAGCTACATGCATAACGTCTAACTCTTC 3995 24 100.0 43 ........................ CGAGAAGTATTATAATACCTCTTATACGATTGGAAACGTCACA 3928 24 100.0 42 ........................ ATTTGATTAAAAATAGAAAAAAATCCCATAGCTTTTTCACTT 3862 24 100.0 40 ........................ GAGAAGTCTGCTAGAATCGATGAGATCACCAACATCATAA 3798 24 100.0 39 ........................ TCGTAAGGTTGCAAGCACTGGCTGGGGAGAATAATGCCA 3735 24 100.0 44 ........................ ATGAAATTAGCACCCACCAGCAATCCTATCGCTATTTCTGTCCA 3667 24 100.0 42 ........................ GTTTTCCGTGAATGCGTCTAATAACATGTGTGAAGGACCGTT 3601 24 100.0 44 ........................ ATGCCATTCATTACGGTCTCTTAATCCTCGTAAAGGATTAGGAT 3533 24 100.0 43 ........................ TGATATTTCCTAATTATATGCGGGGCATGTGGTTGGCTATTAT 3466 24 100.0 43 ........................ TAGACGTTATTTCCGCTCCTCTTCCCTTCCTCCAAGTTGAAAA 3399 24 100.0 40 ........................ ATAAAAATCTTTTTGCCAAAACTTTTAATACTATCATAAA 3335 24 100.0 41 ........................ ATAAGAAGAATTCAGAATTAACTTCGCGAGTTGTTTGATAA 3270 24 100.0 42 ........................ CATATACAACATGCTCAATTTCCCAATCCTCTATTAAGATTT 3204 24 100.0 38 ........................ GAACAGACTAGGCCCGGTTAGGTTGAGGTAAGTTTTTG 3142 24 100.0 42 ........................ TCACCTGAAGCACAGAAGAGTAATCCACCACCACCTCCACAA 3076 24 100.0 40 ........................ TCAAGTAGACATTTGACAATACCACCTTCTGGTTGTTCGG 3012 24 100.0 42 ........................ ATCCCATACTTCCTTCTTATCATTTAATAGATGTTCTTCGAA 2946 24 100.0 39 ........................ AATGCGTTGTGCTCCTGGCTTACATTCTTGATACCTTCG 2883 24 100.0 41 ........................ AGATACTGGGAAATAGAGATTGACGGCGATGAAATCCGTTT 2818 24 100.0 41 ........................ ATTACTATAGCAATTAGACCATCAGCACTGGTCATTCCAGT 2753 24 100.0 44 ........................ TTAACTTCTCGAGAACTTGCTCTTTATTCTCTGTTGCGATTTCC 2685 24 100.0 36 ........................ TTATTAGTTTCAAAATAAGGATCTATTTTATAAATA 2625 24 100.0 38 ........................ TAGTCTGGATAAAGTGCTATTTTTATACCAATAGAATT 2563 24 100.0 38 ........................ CTCATATATAACCATTACTTGTTTTTTACTTTCTAGAA 2501 24 100.0 39 ........................ AGCTAGGGTGCTCAGGCTTCCAGGGTCAATAAATCAAAG 2438 24 100.0 42 ........................ TACAACAGTTCTACAAACCTTTCGACATCATGACGTAACCGC 2372 24 100.0 45 ........................ ATGATGTTTTTATCGCGCCTAGGAAAAATGAAACAATATCACCAG 2303 24 100.0 42 ........................ GGTTGCTGCTTTTACCATAGCGTTACTCGTCCACACCCTGTT 2237 24 100.0 39 ........................ TTTCACCCCCATCTTTATTTTCATTTTGCTGATTTATAT 2174 24 100.0 41 ........................ GATATGGAGGGATGAAGAAAAGGCTCCAATTGCAGAAGTAT 2109 24 100.0 40 ........................ TCTTAGCCTTTTGTCTCTCCTCTTTGTACTTCTGATAGAA 2045 24 100.0 42 ........................ GAAAACGAAGATCCACGCTGCATACGTTGCGTAATCCAGTAG 1979 24 100.0 43 ........................ TCTTCCATCGCTAACATCTCTTCTTTTGCCTTCTCCACTTCCT 1912 24 95.8 43 ......T................. TGAGGGTAGGAACGTAAAGTTCGGCATAGACGTAATTCCGGGA 1845 24 100.0 44 ........................ TCTGCAATGATTTCTGAAGGCGTTTCGTTTGTCTGAAAGCTTAT 1777 24 100.0 40 ........................ AGAGAAAAACAGAGCGTGTTTAGTTGAGGCTAAGCATACT 1713 24 100.0 45 ........................ ATTGTAGACCGAGACATTGTATAACCTATAGGTAACATTGATAGG 1644 24 100.0 39 ........................ ATTCCGGTTGTTTAGCTATGTTGCTGGTCACGCTGAACT 1581 24 100.0 39 ........................ AGCTAAATTATTACGTTTTTGGTGTTACATAATATACTA 1518 24 100.0 43 ........................ TTTCTCTAAACTCCACCCCCTCACTCTCTTTAGCACGCATTAC 1451 24 100.0 41 ........................ TCATTAACGTAAAGCTTAACGACTTGAACCGTATTGTATCT 1386 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 70 24 99.9 41 GATAATCCTTAATGGAATTGAAAG # Left flank : AAGTAAGTTTCCAGATTGAGGATTTTAGGACTGCAGCTGAGGGATTGAGTAGTGAACTCTTGAGGGTTTTGAGTACAGTCGTAGCCAATCCTGGGATAAGACAAGAAGTAATAGCTGAGATGACTGGGAAGAAACTTAAAACTACTATGAATGTTGTAGGGATATTAAAAAAGAGAAGACTAGTTTATCAGAAGGGTAGAGGAGATGGAATTTATCCTACGAAGCTTGGAATATTGATAAGTAAATTAAATCAAGAAAATAATAGAAAATAAATAAAATAGCTTTGTCGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTATCTTTGTAAAGAACATTCAACCTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGTAGAAACGAAGAAAATAACATAAGAAGTAATATAAAAACAATCA # Right flank : AGGCAACGTGATTTCTTTCTATCATCTTTTAGTTCTCCTAGATGTGGTAATATATGTTGAAACTAAACCGATTGTTGAAAATACTACTGTATCTCCGCCGGGTATAGAAGTAGTAGTAGTTAAGTCAAGTAATGTATCTTTAACCTACGGAAACATTTTAAAGTCATATTATGTACTGTGGAGTGAAATCGAATTGCTTTTTACCGGACCGAAGCCACCGCAATATCATGTCCAAGTTAATGCTACAGAAATAATATACAAAGAAAAATAGTTTCACCTCCATGGTATACCTCCTTATGGATCCCGTTTTTGGCTTTAGGTTTAGCACTACTTGGTGCTTTTGTCACATTATTAGTAAGATCTAAATCTGACCATTAATTGGGATTGCATTTGTTGTACTAACATTCGGTTCAGGGACTCAAGGAGTCCAATACTATTAGTGAATAAATTTTTAAAAGTCAATTTTCTTTTTTCTTTAAATGAGGAAAAATTAGTTTTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 17168-9964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000024.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 17167 24 100.0 44 ........................ AGAAATTCATTCTCATTAATCTTAACATACCTCAATCTATCTTT 17099 24 100.0 39 ........................ AAACCTGGGCCTAAATACAGTATCGATATACTTACCTAA 17036 24 100.0 37 ........................ ATCAGTCCCACTGGTGCTTGGGGCGGTGTCTGTCTTA 16975 24 100.0 38 ........................ ATACACCGTCACCAACCGTGCCATTACCGAGTTAGTTG 16913 24 100.0 41 ........................ AACCGAAAGTCAATAAGAACGCCGCTCCTATTGCACCCCCC 16848 24 100.0 40 ........................ GTTCTCGAAAAGAAGGGATATATTATCGTTATTGAAGAGG 16784 24 100.0 41 ........................ TAGGGCTGTATCAAAAACGTTCCATTCAATACCTCACCGTT 16719 24 100.0 43 ........................ AACCGACAATAATTGGTAGACCAGCTCTATCATAACAGAGGAC 16652 24 100.0 40 ........................ TGTATTGTCTGATTTCTTTTGTTTTTCAATTGTTTCTTTT 16588 24 100.0 42 ........................ ATTATTATCCCGCCATTTTCTTCAATTTCCTTCAAGAATCTT 16522 24 100.0 41 ........................ AAGATGAAATAGAAGAAAATGAGGAATTGGAAGAAAATGAA 16457 24 100.0 39 ........................ AAGAATCATGAATGGTAATATCAGTTCTTCAAATCAGCC 16394 24 100.0 43 ........................ CTACGTGATGGGCATGACGGACTCGTGGTTGTATATGATAGAG 16327 24 100.0 44 ........................ TGAATTATCTAACGGAAATGCAACAGAGGGTATTGCTTGCTCTC 16259 24 100.0 42 ........................ TTAGTACACTTAGATCAGAAGTCTGCAATATCTTAGCAGCTT 16193 24 100.0 39 ........................ AAAGTATGTGAAGTGTGGATTAGAAGACATGTAGATTAT 16130 24 100.0 40 ........................ TTTGATAAAATTATCTTTATAAACCACTTGTCAACTTGAT 16066 24 100.0 39 ........................ AGAAATAAACCAATAAGAGACATCTTCGATCACACTCCA 16003 24 100.0 40 ........................ TAAGCAAAACGGCTGCTTAGACTCATTGTTTAAGGCAAAA 15939 24 100.0 38 ........................ ACCAGTTCGTGTAAATGTTGATTGGGAGGACTTTAAGA 15877 24 100.0 46 ........................ CGGTAACTAATTAGCGTAGCGTACTGTGTTGCTAACCCTGGATCCG 15807 24 100.0 46 ........................ CTGATGCTTATAAAACGATAACGGGATTCATAAATTTAAAGCCTGC 15737 24 100.0 42 ........................ TACGAATTTCAGCGTTAACAGGGTCGCGATACATCTACAGCA 15671 24 100.0 41 ........................ ACTTGAAGGGATTTCATGCAGGAAAGAAGCACCCCGGTAGG 15606 24 100.0 44 ........................ AAGTAAACGAGATACTTGGCGAGAGCAGATGCTTGTATCACTAG 15538 24 100.0 40 ........................ GTAGTCCAAACGTCGACGGGTTTCAAGCCTGAAGGGTTAG 15474 24 100.0 42 ........................ CAAAATCAGTCCCTGAAGCAGGATTACCAGGACCTATGTATA 15408 24 100.0 40 ........................ ATAATAGTCAGGACTGGGATTCTCTTCTGTCTTAACTTCG 15344 24 100.0 39 ........................ CAATTGTTGTACCACTGAGTGCTTCTCCTAGAGCCTTAT 15281 24 100.0 39 ........................ TCTTCTCCGGCGGGTGATGGAGTAGTTACAGTAAAAATT 15218 24 100.0 44 ........................ AAACTTCTTATTGTTGACACTGTCGCTAGTAACTTCCATAAAAT 15150 24 100.0 38 ........................ AAGCCCCCGGAACTGACAGGTTGTGTGATAATTACTGT 15088 24 100.0 43 ........................ ACTCCAGCAGACGAGATGATCCTCCGATCGTGACGGACCTTTC 15021 24 100.0 41 ........................ TATAATATGTTAAAGCCCTCCCTCTCCAGCGTTTCTCCTAT 14956 24 100.0 39 ........................ AGTTTAACCCCTTTTTAAATACTTATTCTATTGAGATGA 14893 24 100.0 39 ........................ TCAACAAGAGGAACAAAGAGCTGTAGAATTACTTGGAAT 14830 24 100.0 44 ........................ AAAAATATTGCTTGTGTTGGCGGAAAGAGGGGCTTTAACATTAG 14762 24 100.0 40 ........................ GTAGAAACAACGGCATCCCTATTTCCTTGCAGGAATTAAG 14698 24 100.0 42 ........................ CATCGAACACCCCGATTCCTTTCCGTGTTTTCGCGAATATGA 14632 24 100.0 40 ........................ TTAACGCCTCAGCCTCTCTAACTCCGGATTCGAGTAATAA 14568 24 100.0 41 ........................ CCAGTTTACCGGATAATTAATGAAACTTCTGTAACAACTAG 14503 24 100.0 39 ........................ ATTAACTTCACGTCCCATAGAGTGATCATTACATTAGGA 14440 24 100.0 41 ........................ ATATGATAAAAGAATTAGTAGAAGTTAAAGTGGAAACAAAA 14375 24 100.0 41 ........................ TCTCGCCATCTTTAGAGTAAGAAACTAGTTTTACTTTCAAC 14310 24 100.0 42 ........................ TCGAACGACCCATTATGGGAAACGAAGCTAGAACAATTCCAG 14244 24 100.0 42 ........................ ATGAAGGCGGAAAAGCGGGCGGGCGAGGCGGCGGGGGCGGGG 14178 24 100.0 42 ........................ ATGATAATTCTTGATACTATCATTCTGCACCGCTATGATTTT 14112 24 100.0 41 ........................ AGTAATAATTGTGTTTCCATATTTGTATTGGTATAGCTTAA 14047 24 100.0 41 ........................ ATCACCGCATTCATCATTACTGCAGCAGCTCCTGCAATTAA 13982 24 100.0 41 ........................ AATGATGATGTTGTTATAATCTACAATCCACAGCGAAATTT 13917 24 100.0 39 ........................ AATTCTTCACTTATTTGATTTAATTCGTCTTTGCTTCTT 13854 24 100.0 38 ........................ ATATATCCGGGAATAGCACTGGTTGTGATCAATATTTT 13792 24 100.0 40 ........................ ACATTAACTCAGTGCTTAAGATTATTAATAATATGCGTGT 13728 24 100.0 39 ........................ CTCCTCCTGATACACCCTGAGTTTGCGGTGTACTACTCC 13665 24 100.0 38 ........................ CTTCTAAAAACTTCTTCATTGCTGATAAAAATGGATTT 13603 24 100.0 47 ........................ GATAAAACAGAGTACCAGAGAGACATGGACATGGTGATAAGGACTGT 13532 24 95.8 42 ............G........... TCTTGGAAGGCTTTACATACTTCCGCTAACTTTTGTATGTCA 13466 24 100.0 41 ........................ TTAAAGAGTGGTAAGGGCAGAAGTCGGAAGCGTCTTTACTT 13401 24 100.0 42 ........................ TAGAAGAAAAAAGAAAAGGAAAAAAAGAAACGTGTGGTATTA 13335 24 100.0 42 ........................ TTTCCAACGACTTTAATGCTTCAAGTGATATTGCGTAGTATT 13269 24 100.0 46 ........................ AGAGCTTTAAACATCTCAGCTGATTCCCCAATTTCAGCACCTACAT 13199 24 100.0 43 ........................ ATATAATTTGCAGACCCGCTAAACAATGTCACACCTATGGGTG 13132 24 100.0 42 ........................ CTAGCTAAAGAGATAATTGAAGAAAGAATTGAAGTAAAGAAA 13066 24 100.0 42 ........................ CTTACAGCCCTTCTAACTCACCATCATACTGGTGGGAAGCGG 13000 24 100.0 39 ........................ GTACTGTTCACCACTAACTCACCATTCTGCCAATACGGT 12937 24 100.0 40 ........................ ATTATCATTTCCCGTTTACCCCCCGGTAAACGCTCTCTAT 12873 24 100.0 41 ........................ CCCGGTTAACGTCTTATCTTCAGCTGGTACTTTTACCTTAC 12808 24 100.0 46 ........................ ATTTCTGTTCACGTCGTTAGTTTTCTCCCTTTCCCTAAAAATTTCT 12738 24 100.0 38 ........................ TTAGTATATCCGCTTAAACTCCCTATTTGTATAGGTTG 12676 24 100.0 41 ........................ GCTTATTCAGTGCGGAACATTATATAGCCATGCTGCAGCAA 12611 24 100.0 43 ........................ TCAGGTATCATCAACACAATCGATTCAATCGCATGCGATTTTC 12544 24 100.0 50 ........................ AGAGTGTATATGTTTGACACCGAGGTTGAGGAAGTTGACAGGAAGAAGAT 12470 24 100.0 47 ........................ TTTTTTCTTATAAACGAAAACCCGTTATTTTTCGTTTTCAATTAATG 12399 24 100.0 43 ........................ TCATTATTCTGGATTCAGCCATTCAGCTCACCCCCTTGGTTGA 12332 24 100.0 40 ........................ TTACTATGTGCATCCCGTATTTCCTAGCCTCACTTAATAC 12268 24 100.0 42 ........................ AGACAAGCGTGTTCCTAAACCAGAACTAGCTAAACTAATCAC 12202 24 100.0 43 ........................ TTGTTCTCTTTACTCCTAAAATTTCAGCAATTCTTTTCCAGGA 12135 24 100.0 43 ........................ CATTACCGGGCTGATGGTGAGTGTACTTCAACTCGTAAACTGC 12068 24 100.0 42 ........................ CTTTTGGTTTTGAGGCTTAAGGAGTTTAGTCAGAGGTTCGGA 12002 24 100.0 42 ........................ CTTCTTTCGAATCGTCAAAGAGGCTTTACTTCTATTATAGGG 11936 24 100.0 41 ........................ TTACGTCAAATTTCTATATATGAAGAAACACCTTTCAATTA 11871 24 100.0 40 ........................ AATTCTCCGAGGAACCTCTTAGCGTCTGTTAAATCGTTAT 11807 24 100.0 40 ........................ CGAAATTAGGAAGCCTCGCCCCTTCTGGGGGCAGGGAGCC 11743 24 100.0 38 ........................ CTGAGGAATGTTATGCTGTAGAAATTGAGGAAGATGAA 11681 24 100.0 43 ........................ TCTCTTTCGAAATAAACCCCCTCGCGAGGGCTTGTTTTAATAA 11614 24 100.0 43 ........................ ATACCCCATATAGTATGTCGGAAAACTCCTTGGCCCTAGTACA 11547 24 100.0 42 ........................ GTGAAATCTATCGCAATCTCAGGAGCGGGGGGTGTGATCGGT 11481 24 100.0 42 ........................ ATTTTACTTCAGTATGCCGGAATTGACGTGGATAGTGTTAGA 11415 24 100.0 42 ........................ GTAATTTAACAACTAATATCCTGTCCCCATAGCCTGTATATT 11349 24 95.8 41 .....C.................. ATTTTGAAACCATTTCGACCAAACTCATTTTTCTATTACCA 11284 24 100.0 43 ........................ ATTGATATCCTCTCTCAAGAAAATATTCTATATCTCCTTCCAT 11217 24 100.0 43 ........................ GCCAAAACCTCTATAGACTATTCAACATAGCCGGTAAAGAAAA 11150 24 100.0 43 ........................ GGGGCAAAGAATTCCACTTTTGTCCTTCAATCTCCGATAGTCT 11083 24 95.8 43 .....C.................. TTTTCGCTCTGTCCGACAAAGGGTCCTAAGACTTCTGCAAAGT 11016 24 100.0 39 ........................ TAGAAAAAAAGGGGAAGAGTTTATTAAGCCCCCCTCAGA 10953 24 100.0 42 ........................ CACGAGATACCGTAGCAGCAACTCTATGACCCTCAGGTAGGG 10887 24 100.0 39 ........................ TGTTGTAACAGACTTTGCAGTTCTTCAGCACTTAACACT 10824 24 100.0 39 ........................ ATATATCCAGGAATAGCACTGGTTGTGATCAATATTTTT 10761 24 100.0 43 ........................ ATCCAGTATTACTCCTTAGGACGTAATCTATCTCTTCGTCTGA 10694 24 100.0 41 ........................ ATCCAAAGTTTGTATAACCAATTACAGAACACCTCAACAAA 10629 24 100.0 37 ........................ AATTTATTGTCCATCCGTTAGGTAATGGCGAGATGTA 10568 24 100.0 42 ........................ AGGAGCTCCAGGAAATCATCGATGCTTTGCACTTCTACTCAG 10502 24 100.0 41 ........................ GTGTGCTGGTGGGCGAGGATCAGATGCATCCCGTATTTTCT 10437 24 100.0 42 ........................ AAAATAATTTATACTCAATAGACTTTAAAAACTTAGTCAAAT 10371 24 100.0 41 ........................ ACTCTTTGACGTCTTCTTAGCTCTGATGGTCGGTGCGTATT 10306 24 100.0 40 ........................ AAATTGTTGAAGCATTAATTCCGTTTGCCTTTTCTCATAA 10242 24 100.0 37 ........................ AAATATCTGGAGGAAATTAAACCTGAGAATATACAGA 10181 24 100.0 45 ........................ ACACTAGTCTTACCCTGAGTTACACTTATCAACCCTAAACTTTCA 10112 24 100.0 38 ........................ GTTTAGAGAAGATATACTTAGGGCCGAAATTAAAGAAG 10050 24 100.0 39 ........................ GAATTTATTCTGCTTATGAGCTCTGTAACGGTTATCTCG 9987 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 111 24 99.9 41 GTTAATCCATAATGGAATTGAAAG # Left flank : TTTGCACATAACTACTTCTAATAACTTCTTAGAAAATAAAGATATTATAATTTTTTCTATGTTTTATTTCGATATCTCTCAATTTTCTTAGATTTTAGGTTCTTAAATTTAAGCGTTAATTTAAAAGTAAAATATGTCGTTAATCACGATAAAAATTAAGTAATCCTCAAAGTATATATATGCAATTTCCTATCGTAAGAATAGAGTATATCAATAAATTTTCTTAATTTAAAATCAACTAGTTATTAATGCTTTAAAGTTCTATAAAATTTAGACTATATCTTTGTCGTTATTCCCGTTTTTTATCGGGAATTTCTTTCAATTTATAAATGATTAATAAGAGTATCTTTGTAAAGAACGTTGAATGTATTTCTCTTTTTAGTATTCCCATTTTTTCAAGGGAATACTAAAAATTCAGTAATGATAAATATGTAACATAGAGAAAAGCTTATATAGCAGAAACGAAGAAAATGATAACAGTAATAGTATAAAAATCTTCA # Right flank : CATAATGGAAATTACATATAAATAAAAAGCTGCAATAAAGAAAGAATTCGCATAAGGAAAATTATACTCCAGTAATTATCTTATTATTTTCTTAGTATGTTTTCTATAATTATATACTTCTCAGTTAATATCTATTATTTTCTCTATGCTATTAACTTTTAATTTTCTATAATGGAATAAACCCAGAAAGATCATCATAATTACTTCTAAGCCTTCATGAAATTGTTTTCACACAAGTAATGCAAAGTTTTAGGTCTATATAATAAATCGTAAACTCGAATATATGTACCGTAAAGGCTAAGAATGGACTTTCAAAAACATTTATAGTGAATGTTAATAAGACAAGATGAGTCAGTTACTCAGAATTAAAACGATTAGGCTCATAGAAAAATTAATTTCATAATTTATATAAACATTTCTGCAAATACTTATTAATCTCAAGAAATGAAAGAAGTATTTTAAGATAGAATACTTAGCTTTAAAGCCAAAATTTTTGTCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCCATAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 25951-24357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHFY010000024.1 Sulfurisphaera ohwakuensis strain DSM 12421 Ga0415268_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 25950 24 100.0 41 ........................ TCTTTAATGCTGTCACAATCACATATGAGTTAACACCACTA 25885 24 100.0 40 ........................ TTTTCCTGTCTACTAAAAAGTGGAAGCAGTTATAGTTCCT 25821 24 100.0 42 ........................ ACCTCACTACTCTAATATTGAAATTAAAAAATTTAATAATTC 25755 24 100.0 39 ........................ GACAAACCTGTCTAATCCCATTCCCTACTTTTATTGCTT 25692 24 100.0 40 ........................ CCTTATATTTTCTCGCTGTGGTTGTGGTGTTTTTTGCGGA 25628 24 100.0 41 ........................ TGGTATTCTCCCCTGAAAACCACACTCCTACATTGCTCAAT 25563 24 100.0 40 ........................ ATATGATACACAAACACAATCCCGATTTTATCAAACGTAT 25499 24 100.0 41 ........................ TGAACAAAGGTTCTCCCTTATCCTTTTTCCATCCTAAACGT 25434 24 100.0 42 ........................ GTTGGAAGACCAGTAGAACCTCCACTACCAGTACTAAATGGG 25368 24 100.0 40 ........................ ACAGTATACGGCCCTCAATTCAGCGTAAAAAGTTACGGAA 25304 24 100.0 42 ........................ ATAAGTTATTCATTATCAATAATTCTCTTATTATTGTTTTAA 25238 24 100.0 39 ........................ TAAATGGTACTAAAACCCTCATATCCGCTAGGAATTTTT 25175 24 100.0 39 ........................ ATTCTCGAGTATAGTCATCAACTATTATAATGTTCTCCA 25112 24 100.0 43 ........................ CTTCATTGTACAACCTCCGGCAATAAGAATAACACATAAAGAA 25045 24 100.0 45 ........................ ACGGAAGTCGATGGGCTTTGGTAAACTGGGGAGTTTACCGGGAAC 24976 24 100.0 40 ........................ TTATTTCTACCTGAGGTGTTTCCTCAGCGGGTGTGGGTGT 24912 24 100.0 37 ........................ ATTTAGTAAACTGGCTGGTATCTCAGCCATTGTTGTT 24851 24 100.0 46 ........................ AATACGATACAAATTGGTTCTCTTATCTCAATCCTTACTCAAGTTT 24781 24 100.0 39 ........................ TTATCCCTCGCACAATGAATATGTTGTTCCTATAGACAA 24718 24 100.0 42 ........................ TCAAGATATGAAAAAACTCTTTCAGCCTTCTACTAACTCTAA 24652 24 100.0 45 ........................ CTGTAGAATAATATGCATCTAAAAGTTCTTGCAACTTCATCATCT 24583 24 100.0 43 ........................ GTTCATCCGTAACAATTATTATCACATCATCTTCAGAAGCAAA 24516 24 100.0 44 ........................ ATAGTTACTCCTCCCGCCACATATATGACGTTTCCGCCGTTATT 24448 24 95.8 44 ....G................... TTTAAAATTTTGTGTGTTAGACATACGAAAAATCACCCGATTAG 24380 24 95.8 0 ....G................... | ========== ====== ====== ====== ======================== ============================================== ================== 25 24 99.7 41 GATAATCCTTAATGGAATTGAAAG # Left flank : TGAATTCTTGATGTTGTTATAAACTTGGTTATGTTCAACAAATTTAATATTGTTCAATCAGAATTATTTTTGTAAAATGATTTTGGGAGTACCGTTCAGGGCGGGGA # Right flank : TTTAGAGCATTGACGTCGTTAGCCGAAGTCGCAGCAGTGTAAGGATATTCCTCGATAACATTAGAAGATAAAGTTATTATGTCTCAGAGGTTTCTGAGTAACTTTTCATCTTAACCACAACTTCCCCAAGGCCGATTCCCCTACTCTTCCCTATCCCTAAATAGGAAGCTACGGTTAAATACTTCGAAATAGCTTTCTTGAGCTTCTTGTACGGGATATCAAATTCCATCCATCCTACAAAACCTCTCGATGTCCTTAATCTCCCCTTATCGTCATTTCCTATGACTACAGTCAAGGGTTTAAGTTTATACCCTATAACTCTAGATAAACTATTACTCAGAACCCCAAGCCTAAAGGATTTTAAATCAAGCTCTATATTACTGGTATTTCCATATAAAGCCCTATAAGCCCTATAAGCATAACTCACTATTAAACCAACAGAAGGGATTAGACTATACCCCGGGTTAACATTCTTATATTTCTCTTTCAATGACGGAGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCCTTAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //