Array 1 49568-50659 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000008.1 Clostridium botulinum D/C strain 1276_DC contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49568 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 49634 36 100.0 30 .................................... TTAGCAGAAACTATACTAATGAACATATGT 49700 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 49766 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 49832 36 100.0 30 .................................... AGTACTAAAGATGCTAAATCAAGAATAAGG 49898 36 100.0 30 .................................... ATTGTAGCAGATAGTGCTGAACCTAGAACA 49964 36 100.0 30 .................................... AGCTACAAAATAGGGTGTACCAAAAGGGGT 50030 36 100.0 30 .................................... GTTCTTATAGGAGATTCTTCAGCACTATAT 50096 36 100.0 30 .................................... GTAAAGATGGGTTTAGAAATGAGTGTAAAT 50162 36 100.0 30 .................................... TATTACATTAAAGCAACTGCAACTGTTACA 50228 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 50294 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 50360 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 50426 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 50492 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 50558 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 50624 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : TATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 29923-30604 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000012.1 Clostridium botulinum D/C strain 1276_DC contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 29923 36 100.0 33 .................................... ATGAAAATGAATCATTAGAAATATTTTTAAAAA 29992 36 100.0 39 .................................... ACTTACAATATTTGAAATCCATTGAAATCCATCTATAAC 30067 36 100.0 35 .................................... AGTATCCCAAATTTCCATAGGCATACCTTTTCTAA 30138 36 100.0 36 .................................... TCTATATCCTTTTTCTTATTATCAATATCATCCTCT 30210 36 100.0 36 .................................... CTTGTATATTTCTTTTGATCCCAAAGGGGCTTTCTT 30282 36 100.0 35 .................................... TTATATAATAAATCTAACAATAATTTCATTCGTGG 30353 36 100.0 37 .................................... TTACTTGTCACAATAAAGTGCATCCGGAGAAATTAAA 30426 36 100.0 36 .................................... AAATTAAAAGATAAATTATCAAGGCCCTCAGATAAA 30498 36 100.0 35 .................................... TAAATAATGCTTGATTAAGCATTTTCTTGATTTGA 30569 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : CATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGCG # Right flank : CCTTTTAGAGGGCGGAATGACCTATATACCAACGGGTGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATATAAGAATTAGATTTATGTATAATACTATAATTACCAACATTTAATAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTTAGAGGATCTTCATAAATTAAAATTAATTATGGAGGAAAATAATTTGAAAATAAATAAAAGTCAAATAGCTAGAGAACTTGGCGTTGATCCACGCACCGTAGGTAAATATTTAAATGGATATGTAAAACCTACTACTAGAAATCGTAAATCTAAAATAGACCATTTTGAACCTATTATCAAAGAACTTCTGGGTAAAGATTCTATTCAAATATTCTATTATAAACGTATTTTATGGCAATATCTCAAAGATAATTATGGATTAGATTGTGCTCAATCTTCTTTTAGAAGATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 1025-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000107.1 Clostridium botulinum D/C strain 1276_DC contig_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1024 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 957 29 100.0 36 ............................. AATTTTCAATAGGAAGGATGATATTATGAGTTTTTA 892 29 100.0 36 ............................. TCTATTAATACATCTATATATTGCATGATTTCTTTG 827 29 100.0 38 ............................. TTCCAAATAAGTTCCTTGGGCATGAATAGCTTTTTCAA 760 29 100.0 37 ............................. AATAAATAAATATACAGACAAAGAGGGAAAAGACAGA 694 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 627 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 558 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 491 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 426 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 360 29 100.0 37 ............................. ATTGAGTAGATGCCCTAATTTATCTTGAAATGTACTT 294 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 229 29 100.0 38 ............................. TTATGTATTAAAACAACTACTGCTTACGCTGAAAGCGA 162 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 96 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 32 28 82.8 0 ................TA.G.-...T... | G [7] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : CATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTTTCCTCCATAATTAATTTTAATTTATGAAGATCCTCTAACTTATCTATTTGTATTTGAGAATTAATATTCATTTGTATAATCATAATTACCTCCAGTTTATTAAATGTTGGTAATTATAGTATTATACATAAATCTAATTCTTACATCCTTAGATGATCACTTTCTTGCATTTCCATAATAGCACTTATAATATGTAAATGTTATAAGCAATGGAAGTAAGCAAGTGCAATTAAA # Right flank : TAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21409-21895 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000018.1 Clostridium botulinum D/C strain 1276_DC contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21409 29 100.0 37 ............................. TCAATCGCTTATATATCAACGTATTACCCCCTATAAA 21475 29 100.0 35 ............................. GGCTCTAACAATTGCGTCATTGCAGTATATCCAGC 21539 29 100.0 36 ............................. GAGTAAAGAAAACTGTCGATGGTACTAAAGAACAAA 21604 29 100.0 37 ............................. CTTAATGTAACACACTTAATATTTAAATCTTTGGCTA 21670 29 100.0 35 ............................. CCTTTTCATCCTAATTGCAGAAGTACAACAGTAGC 21734 29 100.0 39 ............................. AATGTATTAGATAATTTTCCTTCACCTTTTTCAAATTCG 21802 29 100.0 37 ............................. ATAACAAATATTAGACTTTAAAGGTTTTTAACTTTTG 21868 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 99.6 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : GAACATAAATTTAATAGAATAAAAACTGCTTTACAAGGATTACAATACTTAAGTTTAAAATCTAATCAATCTAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACNNGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAG # Right flank : TTTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 24147-25337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000018.1 Clostridium botulinum D/C strain 1276_DC contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24147 29 100.0 36 ............................. GAAGATATATGATGTATTAAAACCGGCTATAGCTAA 24212 29 100.0 37 ............................. ACGAAGTTAAAGCTTTAGAAAAAGAGATTGTATCTTA 24278 29 100.0 38 ............................. TAGATTATTAGAATTTCTAATGTTAGATTTATTGTTTT 24345 29 100.0 36 ............................. TTCGTCATTTCCCTTTGATACTTGCATAGGTACAAA 24410 29 100.0 36 ............................. GTATCACCGACTAACAAGGATTTAGAAACGGCAAAG 24475 29 100.0 36 ............................. GCCGATTGGATTATTGAAGGTAAATCATCCTTAATC 24540 29 100.0 37 ............................. GTATTGTTGTCTTTTAAATATTTCATCATTTCTTCTA 24606 29 100.0 37 ............................. GCGTTATATTTATCGTAGCTGCCTATAAATTTTTTAT 24672 29 100.0 35 ............................. ATGTTTTTTAATGCTATAAGATAAGAGGTGCTTAA 24736 29 100.0 37 ............................. GATTTGTTCTAGGTAGTAATGCAGATGAATGTATTAC 24802 29 100.0 37 ............................. GATAATTACCTTCCACGAAAAATCGAACTCTTAGGCA 24868 29 100.0 37 ............................. TCCTTACGTGTTTCCTTCATGGTAGCTCTATATAAAT 24934 29 100.0 37 ............................. AGCTCAACAAGAAAAAGTATCTAGCATGAATGAATTA 25000 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 25065 29 100.0 37 ............................. TATCAAGTATTTTAAAATCTAATGTACTATACTTTCC 25131 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 25196 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 25261 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [25310] 25310 28 82.8 0 ........TT......T....-......A | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.9 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : ATCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 14258-14547 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVJA01000007.1 Clostridium botulinum D/C strain 1276_DC contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 14258 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 14323 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 14388 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 14453 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 14519 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //