Array 1 389944-389016 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMT01000003.1 Serratia proteamaculans strain B-41162 NRRL_B41162_GTCAGTCA_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 389943 28 100.0 32 ............................ AAAGTTATCGGCGCTCTCCGGCGACGGGTAGC 389883 28 100.0 32 ............................ CTGTTTGTCGTACAGCCTGTTGCCACCGCAGC 389823 28 100.0 32 ............................ AACAAGTCACCAGGCAGGCACTTACCGCGCAG 389763 28 100.0 32 ............................ GTCTCCGCGAAGGCAAGCTGACGCTCTGGTAT 389703 28 100.0 32 ............................ TCGCCAACTGGAAACCCGTCGTTATGGTCATG 389643 28 100.0 32 ............................ GTCGAGAGCGGTAAGCACTTCGTTATGCTGAT 389583 28 100.0 32 ............................ TCACGGGTATCGATCGCGGCCATCTGCTTATC 389523 28 100.0 32 ............................ CAAGAAACGATAGTCAAGGCTGGCAATCGAAA 389463 28 100.0 32 ............................ AGACCGACATGCTTTGGTTCATCGCCGTAATA 389403 28 100.0 32 ............................ GTGGATTGTGCTTTCGCTGTGGTGCTGCAAGC 389343 28 100.0 32 ............................ TGATTATTCGGGTTCCGATACGTCTGCGCATA 389283 28 100.0 32 ............................ TACGTATGAACTGCGCAGCAACGCCATCAACG 389223 28 100.0 32 ............................ ATGAGCACCACACTAACAACTGTTGCCAGCGT 389163 28 100.0 32 ............................ TCATCGAAGCGAAATTCTTCGACGCTGTCGGA 389103 28 100.0 32 ............................ CAACGCTTGATTTGTTTTAGCCGGTTACGCAG 389043 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACGTTGGCTGAGCTTCAGGAAAGCGGTTGGTTGAAAGGGTTGCGGGACTATACCGGCATCGGCCCCCTTCAGGCTGTTCCGACTGGGGCGCAACACCGAACGGTCAGCCGGGTTCAGGTCAAGAGCAGTGCAGAACGTTTGCGCCGCAGATCGGTCAGTAAAGGTTGGTTGACCGATGCTCAGGCCAGGGAAAAGATCCCGATGGCCAATGAACAACGCTCATCTCTGCCGTTTATTACGCTAAAGAGCCTATCTACGGGGCAAAGTTTTCGCCTGTTTCTGAAACAAGGGGAACTGCAGGCAGTACCGATAGAAGGAAGTTTCAGCTTTTATGGTTTGAGCGCATCTGCCACAGTGCCTTGGTTCTGACCCTTTTTTTCGGGGCGGAGATAACTGATTGATTTTATTATCTCTGCCCTATGCCTGAAAAATTAGGGTTAAAGCGCGAAATAACTACCATTTTCTTTAAGAGTCAGTTTGTTACAGGTTTTTTTGTACA # Right flank : AGCCGGTCTGGATAATAATATGCAGCAACTTTGATAGCCAGGGACGGAATATGATGGCATGTTCTCCAGCGCAATCCCATCCCCGGCGGTCAATGTGTTACTGCTGTGAGCCTTTTTTCCCCACCATTTCGAAACGCGGTGAAACCATGCCGTACAGCGTCCAACCGAGGAAGGTGGCGATAGCGCCCCACATCATCGCTTCCTCACCTGAACTGTAGAGGGCATAGAAACTGTACAGTGCCCCAATGCCGGCAATGATGTTGGCAATTCGCGCTTTTTTCTCCGGTACTTTCGCCACTTTCTGAATGATGATCAGCGCCGCCATCGACAGAATATAAGGGATGATATTGGTCACCACCGCCAGATTCACCAGCACGTTGAACTGTTTATTCAGCGACGGGCTGATGGTCATCAGCGACAGCACGCTCTGGATCACTACTATGGTCAGCATGCCTTTGACCGGTGCATCGGCCTTGCTGAGTTTGGAGAAAATTTTCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 399323-398333 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMT01000003.1 Serratia proteamaculans strain B-41162 NRRL_B41162_GTCAGTCA_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 399322 28 100.0 32 ............................ ATTAAACCCCAGTGCGAGCTGCAGCCTGGCAC 399262 28 100.0 32 ............................ AGTCGTGGAAGCATCCGTGCCCACTGTTCCAG 399202 28 100.0 32 ............................ GTGAGACAAAGCCGGTGGGGTACGTCTCTGCA 399142 28 100.0 32 ............................ ATCATTCAAATAAACGACATCCCTGCCATAAA 399082 28 100.0 32 ............................ AAGGCTTACCGCCTGTGGCTGGGTCTGGATAA 399022 28 100.0 33 ............................ CAGGGCGTAATTCATAGAACCGGCCCTAACGAG 398961 28 100.0 32 ............................ TGCACCGCCGCCACCTCCGCCGCGTGTTAAAT 398901 28 100.0 32 ............................ GAAATCGAAAAGGCCATCATGTCGCTATCGCA 398841 28 100.0 32 ............................ AGAATGCCACTCCCTGAACATGTGCATCCGAT 398781 28 100.0 32 ............................ ATGCACGCGCGCCGTTGCGGTCAACTACCAGT 398721 28 100.0 32 ............................ GACATCGGCATCTCTCAGGTCAACTACCGTTG 398661 28 100.0 33 ............................ TTATCCAGGGCGGATACGTACTCTTGCGAGTAG 398600 28 100.0 32 ............................ TTAAAGCAGATACGGGGAATCCTGACGCTGAT 398540 28 100.0 32 ............................ GCCATTTGGTGGCCTGTAACTTCCATGCCAGA 398480 28 100.0 32 ............................ TGCCGGTGACATGCAGCGCTCACAAAACACCG 398420 28 100.0 32 ............................ GCTATCGAAGCGCGGGAAGTGGAGAAGTTCGC 398360 28 78.6 0 ...........C........T...AGTC | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGAGCCGTTTAACCGGCTTTAACCTCAACGTCCGGCAGTAAATAATCCAACGAAAGAGGCGGGTGACTCACCAGCCTCTCTTTTTGCATTTTGCTCAGTTGCTTGACCCGATATTCCAGCCTCAGTGCCCTTGAACGATCCCCTGCCTGGCAGTGAAACGCCAGCACCAGCTCTCCTTTACCTCGCAGTGCCTTCGCACCCTTACCGGCCTGATGTTGCGCCAGCCGCCGAGCCACGTCGGTGGTGATGCCGGTGTACAGCATACCGCTGGGCATGCGCAGCATATAGAGGTGCCAGACACTGGTGTTTGTCATATAAGTCCCTGTAAATAATTGAGCGTTACTATAGGCAACCTAACTCCATCGCTGAACCCTTTTTTTGCGGTGTAATTTAATTTATTGATTTTAAATGTTTTTAATTGAGTGTGGGGAAAAAGCCTTTTTGCACCAATCGTGAGGTTACTCTTCAACAATCAGCTAATTAGCGCTAATCTCCAACA # Right flank : CTATCAATAATGATATTTTGTCGGCTGGTAACGGTTTTCCCATTGTTGGTATGATAAAAACTTAAGTTGCTAGGTTAGTTGAATATATATTTTCTCTATTGACCAAGGTGGAATCATTTAAATTATGGATAATTCAAGATATGAGTAACTCATTCTCGCCGTCCGATTTAAAAACTATCCTGCATTCCAAAAGAGCCAATCTCTATTACCTGCAATATTGCCGTGTCTTAGTCAACGGTGGGCGAGTTGAGTATGTTACCGATGAAGGAAAACAATCTCTTTATTGGAATATCCCCATTGCTAATACCTCTGTTGTCATGCTCGGGACAGGTACTTCAATCACGCAAGCCGCAATGCGCGAATTTGCCAAGGCGGGGGTATTAGTTGGTTTCTGTGGTGGCGCTGGGACTCCTTTATACGCGGGCAATGAAGTGGAGGTTGCCGCTTCCTGGTTATGTTCGCAGAGTGAATATCGACCAACAGAGTATTTGCAACATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //