Array 1 101515-101679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYH01000025.1 Candidatus Soleaferrea massiliensis AP7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 101515 33 100.0 33 ................................. TAAACTTAACCAACCCGCTTAAATAGCGGGTCT 101581 33 100.0 33 ................................. CATCCGCAAGCTCTTTTCAGCATGATTTTCATT 101647 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 100.0 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAATA # Left flank : ATAATATATCCGATGCGGTTCAGGCGGCAAAGCAGTATGGCGGCAATACGGTTATTCGATATGAAGCCAAAACCAAAGACGATCCTACTAAAATCTATCGAATCATCAAACAGGTTAACTGGACCGGTACACTGGAACAAGCGAACATTTGGATTGAAAACAACAAGGTATATAATACCTTCCTTCAGATTGAAAGAAAATAGATATTTTAGAAAGAGTCCTCTTTTCAGCCGAAAAGAGGATTCTTTTTTATGTGGGTGCATAAGAATATTGGTTGACAATATAAAATGGATTTTATATAATAGGTGTAGCGCCGGGAGGAAAAAGTTAACAATGCGAACCCTAAGTGCACATGGATTCCCCGTTACCTTCGCAGATGGGGATATATGCGCATTTATAAGGACTTGAAACGGTAAAAAACAATTTTTCTGATGCTGTTTTGCTCCTTCGCGCAATGATGCTTTTAAAATGGCCATAATAAGCCATTTATCTCGGATGCG # Right flank : ACAAAATTTTTGCTAAGTTAGGGTCTGACATGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYH01000026.1 Candidatus Soleaferrea massiliensis AP7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 35 33 100.0 33 ................................. AGTAAATGGATCATTTGAACCGAGTATTGCGCA 101 33 97.0 33 ................................G ATGGATACCAAATGAATTTGGAGAATAACGAGG 167 33 100.0 33 ................................. CTCTCTTTGATCCTTTGTGTCCAAAGCGAGTGG 233 33 100.0 32 ................................. TGCCGAACAGATTTCGGCGTAGTATTGTTTTG 298 33 97.0 34 ................................T AGCCAGGTCTCCAATCGTGTGAATGCCATAACGC 365 33 97.0 33 ................................G CCGATCCGTATGCGGTGATTGATTTTGCGAACA 431 33 97.0 33 ................................A AAGACAAGACCGTCTACAATTCCCCAACCGCCA 497 33 97.0 33 ................................T ACTCATCCAACTCATCTTCACCAGAAATAACCA 563 33 97.0 35 ................................G TCTGCTGGCTTGCCTGCGGCATTATATCTGCTTTA 631 33 100.0 33 ................................. GGCAAGGGTTATACTCGTCGCTGTCGTTCCGGT 697 33 100.0 33 ................................. TATCAATGAATATTACGTTGATCATCCGGATCA 763 33 93.9 34 .C..............................G TCGGATAGATTTCCCCTGTCTTGACCGGTTTATC 830 33 93.9 34 ............A...................A ACGTTGTGAAATGATCATATTCCCATTGCAAAAA 897 33 97.0 33 .......................A......... CTGACAATGGTCTCTTTCTTCTCCTTCCACCCC 963 32 78.8 0 ..T....T............A....-....GAA | ========== ====== ====== ====== ================================= =================================== ================== 15 33 96.4 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAATC # Left flank : AATGCAACGGATGCGGATCGAATTGATTGGAACAG # Right flank : ACCTTTTGCTGTGGAACTTTTATCAGACCACATTTGCCGTACTCATTGCATCTAAACATCACAGAAAACAGACTGCATTAAAAAAGACAGTCTCCTGTCGCTGTATAGCCACAATAGGAGACTGTCTTTTTTCTTATGTATGATCAACCGGATGTTCAATTCTCTTCATCCTGTAAAAATTCCCGGATGGCAGAAAGGAAGGTATCCCCATATTTCTCTAATTTGCGCTGACCGATACCCGAAATATCCATCAATTCCTCTTCAGTTTGCGGTACGACAGCAGCCATTTCCCGCAATGTCGCATCGGTGAATACGATGTAAGCCGGAACACTCTGACGGAATGCAATGGATGCGCGTAGCTTTTTGAGCCGGTCGAAAAGCACTTTGTTTTCAGGCGGCAGCTGTGATGCCGCTGCCTTTTTGGGCTTTGGCGCCTCTTCCTTCGGCAGCTTCATCTGGATTTTCTCTGCGTCAAACAAAGCTTTTCGAGCATTGGAACC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41486-42161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYH01000027.1 Candidatus Soleaferrea massiliensis AP7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 41486 32 100.0 35 ................................ GCGGAATCCTTAATTGGAGCAACATCAGGCGGAAA 41553 32 100.0 34 ................................ TCTTTGTGCGTCCGGGAGATTTCGCAGGCTTCGC 41619 32 100.0 34 ................................ AACTCGTCTATGCTTTTAGGTTCGGCGCAATCGG 41685 32 100.0 35 ................................ AGCGCATCGATCAGTCGATCGACCACTACCCATTG 41752 32 100.0 39 ................................ TAGATAGCCGAAAAGAGGATTCTTTTTTATGTGGGTGCA 41823 32 100.0 33 ................................ GCGTCCACCGTGATGACCGTATCCTCCGGTCCC 41888 32 100.0 34 ................................ CCGATGCTTTGCGTCACCATACACCTGAACTTCT 41954 32 100.0 34 ................................ CGGGCGTCGGCGGCATGGGCTTTAACATCGGCCT 42020 32 93.8 34 ..................T........A.... TCCACAACGCCGTCTTCGCTCGTTTTAACCAGCC 42086 31 90.6 12 .............T......T......-.... TTGTTGAAGCAA C [42092] Deletion [42130] 42130 32 68.8 0 ....T.T....CATAA..A...AA........ | ========== ====== ====== ====== ================================ ======================================= ================== 11 32 95.7 32 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : TTTTAAAATTTCCAAAACCCGTTCTTTTGTAATCACAATCAATTACCCCCTGTATTTGTCATGAACCCACCTGAAAATGATCTGTAGGTCATATTATTTCTATTATATAATATTTCTAGCGTCAAGTAAATAGGCCATTTTATGACCTTTTTGTCACTTATGTGTTACTTTCAGATAGTGTATATGCAGATAACTCTTTTGTGAGACTCGGTTGTTGTCTATAACTGTGTCAAAAGTAAGAACTGTCATAGATCGACGAAAAAGCAAATAGATTGACAATATCCTTATGAGCGCGGTATAATAATACTGTTCATAAAGAATCACGGAAATCCCTGTGCGAATGTCGAGTGAACATGAAATCTCCAGGAGGTTCGCAGTGTCGTATTGATGGGATTTTTTGAATATTGACGGTGTTTGATGGTAAGATTGAGATGCTGTTTATCACCTTCGCATAGAAGAAGCTGTAAAATGGCCTGTTAGGCTGGTTCTTTGTGTATGCG # Right flank : TCAATCTGTCTGATTCCCACAAGTCACAAAACAGGATTGTGCAAACAGTCCGGATCTTTATCAGTACTAAAGAATAAACAACAAAAAATCCCCGCAGATGATCTTGGTCTGCGAGGCTTTTTGTTTGCTAAAATTTCATTTTAGCAAACAAATTCATCATAAAAATAAGATGGAAAATTGATATAATATTTTGAATAGCGGAATTTGAAGAAAAGGGAGAGAGTATGAAGACTTTTGTCATTGGGCAAAACGACTGCAACCAGCGCATCGATAAGTTTATCACCAAAGCCGTGCCGAAGCTGCCCCAGGGGCTTTTATACAAATATATTCGCACCAAACGTATCAAAATGAATGGCAAGCGCTGTAAAAACGATACCCGCCTGCAGCTTGGAGATACGGTTTCCCTTTATATCAACGATGAATTTTTTGAAACGAATCCCGGCGGTCTTGATTTTTTACGGGCCGGCACGCACATTGATGTGGTCTATGAGGATGAAAAC # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41524-42483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYH01000032.1 Candidatus Soleaferrea massiliensis AP7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 41524 33 97.0 33 ................................C GGTTCGACGGCCGTGGCGCCACCGGATGTCACG 41590 33 97.0 34 ................................C ACTGCGAAGCCGGTCATCAAGGCGCACGGAAGCT 41657 33 97.0 33 ................................C GATACCGCCTGTAATCGGCAGTTTGAATTTAGG 41723 33 100.0 34 ................................. GTTTGCCTCTCTCTTACTGTGTCTTTATTATAAC 41790 33 100.0 34 ................................. TTTGTTTTGCCCATCGCTTACCGCGTTGAGTCAA 41857 33 97.0 32 ................................C GCCCAAAACAAAAAAGTGCGGGAGCGTGGATC 41922 33 100.0 32 ................................. CCGCCACGAATATCCGAAAAAGGTCGCCAGTA 41987 33 97.0 33 ................................A GCAACAGCATCGTATAAATATTGGCTGCTATTT 42053 33 100.0 33 ................................. TCCCCCGTCGTATTTTCTTGAGTGGGCCATTCT 42119 33 97.0 34 ................................G CCTTGATCCTCACGGCAGTAATAGTTACAATCGG 42186 33 100.0 33 ................................. TTCAAGAATGCTTTCAGCCTAGTCTCCAGTTTA 42252 33 93.9 33 ...................T............C CTTCATTCGGTGGGTTGATCCTCTGACGTAGTC 42318 33 100.0 34 ................................. CGCTCACCTTGGGTGAAAATGACGACGAGTCGCC 42385 33 97.0 33 ................................C TGTATGATTTCGGTGAAGCCTTTCCGATCTGTG 42451 33 97.0 0 ......................A.......... | ========== ====== ====== ====== ================================= ================================== ================== 15 33 98.0 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAATT # Left flank : ATCGGGGAATACCCTGCTTTTGTGGCGAAGTAGGTGAATGGAACATGTTGGTGCTGATCACATATGATGTTGCAATTTCTCAGGGAAACGGCGCCAGGCGGCTAAGAAGAGTCGCAAAAATCTGTCAAAATTATGGACAGCGGGTACAGAATTCTGTGTTTGAATGTGTTGTGGACAGCTTACAGCTGCAGCAGCTGAAAACACAGATTGCGGCTGTGATTGATCTGCAGCACGACAGCATCCGATATTACAATCTGGGGAAATCCGGACAGAAAAAGGTCGATCATGTCGGCGCAAAGCCGAGTTTTGACATAGAAGACGTGCTGATTGTCTAATGCGAACCTCTAGTGAACATCTTTTTCCCGAAAGGTTCGCGGATGAGGAAAATGCCCATTTTTCATAGTATACTCTTGGAATTTGCATAAAACAGATGACGCGTACTATACTTTCGCAGAATTACATCAAATCATGACGCTATATCGGCGTTTGTTCTGCATGCA # Right flank : TACAGAACAAAGAAGCAACTGCCCATTTTTAGATGTCGCAATATGTTATGGAACTTTTTGTAGAAATAAAGCCCCCTCCTCTTGGAGAATCGATTTAAAAGAATCCCCCTGACCAAATTGGTCAGGGGGATTCTCGATCATCTCACATATTCAATGACCTGGTCAATAAAAACCTTGCCGTCCAGATGATCTATTTCATGACAAAAACATTTTGCCAACTCATCTCTGCCCGTTAAAACGATCTCTTCTCCATTCTCATTTAGAGCCTGAACGATCACTTCCCGGGGACGAATCGTTCTTCCAAATCGATTGGGAAAACTGACACATCCTTCGATGCACTGCTGCTCCCCGCTTATATGAATAATTTTAGGATTGACCAGCTTGATGAGGCCATCTCCCATATCGATGACCACAAGGCGTTTCAGAATTCCAACCTGACAGGCGGCCAATCCTGCGGCATTCCCGATATCATACATCGTTTCCGCAAGATCGTCCAGCAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //