Array 1 32180-30096 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJW01000127.1 Salmonella enterica subsp. enterica serovar Infantis strain 88sab NODE_41_length_40877_cov_25.624100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 32179 29 100.0 32 ............................. CAGAAACTTAGACAAACTCAGGCTCCTGATTA 32118 29 100.0 32 ............................. ACCACTGTCCACAGTCTGTCGGCGAACTACCG 32057 29 100.0 32 ............................. GCACTGGCGCAGAATTACGCCAAATCGCAGGG 31996 29 100.0 32 ............................. CGCCCGCTGGTGGCAGCGTACCGCCGCCGGGA 31935 29 100.0 32 ............................. GCTTGGTAATTACTATGCCGAGCTTATCAAAC 31874 29 100.0 32 ............................. AATCCACATATGTGAAACTCCAAGGAGGTTTG 31813 29 100.0 32 ............................. GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 31752 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 31690 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 31629 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 31568 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 31507 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 31446 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 31385 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 31324 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 31263 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 31202 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 31141 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 31080 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 31019 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 30958 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 30897 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 30836 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 30775 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 30714 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 30653 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 30592 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 30531 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 30470 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 30409 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 30308 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 30247 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 30186 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30125 29 93.1 0 A...........T................ | A [30098] ========== ====== ====== ====== ============================= ======================================================================== ================== 34 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45073-46138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJW01000160.1 Salmonella enterica subsp. enterica serovar Infantis strain 88sab NODE_28_length_53736_cov_24.679291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45073 29 100.0 32 ............................. CATCACCGCTGAACATCTTGAAGAGTTGTTTG 45134 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 45195 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 45256 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 45317 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 45378 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 45439 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 45500 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 45561 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 45623 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 45684 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 45745 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 45806 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 45867 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 45928 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 45989 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 46050 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 46111 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //