Array 1 164580-163452 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYP01000005.1 Salmonella enterica subsp. enterica serovar Kottbus strain 2012K-1725 NODE_5_length_402040_cov_3.4826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164579 29 100.0 32 ............................. TGTGCTGGATAGTACCTACAGTAACTTTGTGG 164518 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 164457 29 100.0 32 ............................. TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG 164396 29 100.0 32 ............................. CCGATTTTCAAGATGCGCGTAACGGTCATTAT 164335 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 164274 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 164213 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 164152 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTAAC 164091 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 164030 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 163969 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 163908 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 163847 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 163786 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 163725 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 163664 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 163603 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 163542 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 163481 29 93.1 0 A...........T................ | A [163454] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182129-181126 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYP01000005.1 Salmonella enterica subsp. enterica serovar Kottbus strain 2012K-1725 NODE_5_length_402040_cov_3.4826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182128 29 100.0 32 ............................. GCTATCGCGAGCGGGTGCTGCCGTTCGTGACG 182067 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 182006 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 181945 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 181884 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 181823 29 100.0 32 ............................. GATCGCTCATGATTGATCGAGCTGGTGGCCAC 181762 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 181701 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 181640 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 181579 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 181518 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 181457 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 181396 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 181335 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 181274 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 181213 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 181153 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //