Array 1 5963-7318 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAAX01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate R617, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5963 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 6029 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 6095 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 6161 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 6227 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 6293 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 6359 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 6425 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 6491 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 6557 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 6623 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 6689 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 6755 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 6821 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 6887 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 6953 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 7019 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 7085 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 7151 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 7217 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 7283 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //