Array 1 166543-164761 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2025 NODE_6_length_275190_cov_4.549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166542 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166481 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166420 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166359 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166298 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166236 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166175 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166114 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166053 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165992 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165931 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165870 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165809 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165748 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165687 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165626 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165565 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165504 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165442 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165339 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165278 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165217 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165156 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165095 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165034 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164973 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164912 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164851 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164790 29 96.6 0 A............................ | A [164763] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184168-182675 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2025 NODE_6_length_275190_cov_4.549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184167 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184106 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184045 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183984 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183923 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183862 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183801 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183740 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183679 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183618 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183557 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183496 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183435 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183374 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183252 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183190 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183129 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183068 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 183007 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182946 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182885 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182824 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182763 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182702 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //