Array 1 1553-1384 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821263.1 Neisseria sp. HMSC075C10 Scaffold292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1552 36 88.9 30 T...G..GC........................... AGAGCACCCTTAATCAAAGCAGCATTGTCT T [1546] 1485 36 100.0 30 .................................... TTGCCAAAAGTCATATTAGAACCCGGGCCA 1419 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : ACCTCAACGGGAAACCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAAATGTGTTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACAATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCATTTTTGTCAGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 133089-132482 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821278.1 Neisseria sp. HMSC075C10 Scaffold724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 133088 33 87.9 33 NNN..........G................... TTCTTCAGGAATATATTTAGCGAGTACTTTTTC 133022 33 93.9 34 .A...........G................... GCTCGCTCCACGAAAACGGCAGCCAACTGCTGGC 132955 33 90.9 33 AG...........G................... AATCCCTATAAGGATGAACAGCACACCGTACAA 132889 33 100.0 34 ................................. CTGAACCGCCGAAGCCACATCTATCAGAAGATGA 132822 33 100.0 33 ................................. TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAA 132756 33 87.9 11 .C.....A.....G..............A.... AACCAGCGCGA Deletion [132713] 132712 32 78.8 32 .GTT...AAA...-................... CGCAAGGGCGATATGATCGTGATTTCCAACCG 132648 33 87.9 34 TC.....A........T................ CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTT 132581 33 78.8 34 GA.....A.....G..TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCC 132514 33 81.8 0 G.....A......G..A...........C...T | ========== ====== ====== ====== ================================= ================================== ================== 10 33 88.8 31 CTCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CCTACAACCCCGAAACCGACAGCCTGCGCTTTTATCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACATCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTATAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGGGGGCTTAGCGAAATCGGGGCTACGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGTCGGTGCTCAATGGTGGAAGTATGCTGACAGCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGTTAATAAATGACAATGCCGTCTGAAAAAGTTTCATATGGTATTTTTTCTATTTACATATTAAATTTAACATCATCTTATCATTGCATGATATCAGTCTGAATTTTTTAGAATTTCAATATGAAACCTCTAATTTACTATGCCCATTCCGCGTAAGATAAACTTGGTAATCTCTTACCTTACTAACTCTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGCGAAATGGGGGCTGAGTTTGCTTGGGTATTTGGTGCGCAGGAACAGGCCTGCCAGACGGGAAAGCTGCATGGCTTAGGGAAATATTCGGAAGCCTTTAATCATCGATTGCATGGTGGCCCATCAGTCGATCATGCTACCTCCGGCGCAAAATTTCAAAAATGCTTGCTTTATAGTGAATTCCAAAGTA # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : AGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //