Array 1 4687768-4688997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077407.1 Enterobacter roggenkampii strain FDAARGOS 1430 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4687768 28 100.0 32 ............................ TGTGCCCACTGACACCATCACTCACAGCGGTG 4687828 28 100.0 32 ............................ TTGACGGTCTGGCCCAGGGCATCCGTCAGGGT 4687888 28 100.0 32 ............................ TGGTGAGCTGCGGCGAACTGTTGGAGCTGGTT 4687948 28 100.0 32 ............................ AGCAACAACAGCTAGACATCAAAATCACACCT 4688008 28 100.0 32 ............................ CGCACGGTCACGCAGCCAGCGGATATCCCATA 4688068 28 100.0 32 ............................ CTTATCACGCGCCGCCCCCAACCCTTCTAACG 4688128 28 100.0 33 ............................ CTCGGCAGATATTACTCTGCCCGACAAGGAAAT 4688189 28 100.0 33 ............................ CGCCGACGTCGCCGTCGTTCTGACGATGATGGA 4688250 28 100.0 32 ............................ ATATTCATCACCAGCTAAGCATGGGTAATAAT 4688310 28 100.0 32 ............................ ACCCTGGCATCGGGCCAGAAAATGACAAAAGA 4688370 28 100.0 32 ............................ TTCGCAAAGGAGTGCAGTCATGAGCAAATCAC 4688430 28 100.0 32 ............................ AAAACCAGCGGCGTAACACCTGCAACCGTAAA 4688490 28 100.0 32 ............................ CAGTTTGCGAGGGGAAACGCCTTTGACCTCTG 4688550 28 100.0 32 ............................ ATTTGACTTGCTGGATGTTAGTTACGCTGCAC 4688610 28 100.0 32 ............................ TCCTGCTCCTTCACCTGCTGGGCAGTGATGTT 4688670 28 100.0 32 ............................ TGCCGGGGTCTTTCCGTTTTACCTTTCAGCGC 4688730 28 100.0 32 ............................ TAAGCCCGTCCCGTGTCCGTTTATGCTCCAGT 4688790 28 100.0 32 ............................ GATATCCATATCAATAGGCAGGGCTGACAACC 4688850 28 100.0 32 ............................ GGTTGCCCAGCAGCAGCGAAGGGATATCAACG 4688910 28 100.0 32 ............................ TGAGAGCGAGAAAAGCAAGATTGAGAGCTACG 4688970 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGCGGGGTGGGCTTTATCAGCGGCATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTAACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGTTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGAGACGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACGTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4705153-4706262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077407.1 Enterobacter roggenkampii strain FDAARGOS 1430 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4705153 28 100.0 32 ............................ AAAAAATTCAAGAAAGGGAAGGGAAAGACACC 4705213 28 100.0 32 ............................ AGGGGGAATTGAGTAAGATCGCAAACTCTCAA 4705273 28 100.0 32 ............................ GTATAGTGAGACATAAGCTCTTTCGCTCCGAT 4705333 28 100.0 32 ............................ AGTGGCAAGCTGGCCGCAGCCATCTCTAAAGC 4705393 28 100.0 32 ............................ TTATCATAAGCGGGCTATAGACCGCTGGTATG 4705453 28 100.0 33 ............................ CCGGAACTGGCAAAACAATGTTCAGCACCACGG 4705514 28 100.0 32 ............................ CCCGTCGCGCTCATGAATCGCTCCGCTGCGGT 4705574 28 100.0 33 ............................ ATTGACTGACGCCACACGCACACCTCCCCCCCA 4705635 28 100.0 32 ............................ CGCTATATTCATGATGGTTCGTACACAAACAA 4705695 28 100.0 32 ............................ TCGGATGTTCTCGCGCCAGACTCGCTATGATT 4705755 28 100.0 32 ............................ AGACCAGCGTGGCCACATTGCACCTGCTTCAT 4705815 28 100.0 32 ............................ TTATCGCAAGTCTTGTCGTCGTGGCGGTGATG 4705875 28 100.0 32 ............................ TCGCGGGGCTATGACTTGTCAGCCCATCGCCC 4705935 28 100.0 32 ............................ GAAGACATGAAGCGCTCAATGAGAGCCAGGAT 4705995 28 100.0 32 ............................ TGACTGGGATAAGCACGCCACGCCTGGCGCGA 4706055 28 100.0 32 ............................ GGAGATGAGTAAAGTGGTGCCAGCCTGGCATC 4706115 28 100.0 32 ............................ TACGGCGGGAATTGACACCACGACCACGGGGA 4706175 28 100.0 32 ............................ AACGACGGGCGCGGTCTTGATACGACGCTGCT 4706235 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : ACTCCCACAAACGCAGCCCGTATGTCGTTGCCTCGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGCGGACGAAGCAGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGTCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCGATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATAGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATTTAGTTTGTGGCGTCGGGGATAATCCCTGGACGCCACTGGCTTGACCTTTTTTTTGATGATTACGTAACTTATTGATTTAGAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGTCATGGAAATGGCGTTACTGCCACACGGACAGCACACGTAACAATCTCTCACAAATATTCACCGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATCCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGGAAAAAATGATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATGTCCGATAACATACCCGCATTCAACACCTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGATTTGAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAATCTTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4715815-4716803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077407.1 Enterobacter roggenkampii strain FDAARGOS 1430 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4715815 28 100.0 32 ............................ TGGTGACGCTACTGTCTTCACGACTCAGCAGC 4715875 28 100.0 32 ............................ TCTTGTACGCAAACATCTTACCGATTTTTTTA 4715935 28 100.0 32 ............................ CATCTCACGAGATATTTTTGAAAACGATGGAT 4715995 28 100.0 32 ............................ TCCACGACGCAGCAAAGTTAATCCAGGGGGAA 4716055 28 100.0 32 ............................ GCAAGCCTGCCGGACTTCTGGAGGATCTCTCC 4716115 28 100.0 32 ............................ GACAAGCTGCTGCGTGAGTCCGGCTTCGATGA 4716175 28 100.0 32 ............................ ATCGTGGCGATCAGGTGTGACACCTCGGAAGA 4716235 28 100.0 32 ............................ AACGACCGCAGCGAATATCACTGATGTGGTGA 4716295 28 100.0 32 ............................ TGGACCCGGTTTTCTGAGAAAAAAATGACAAA 4716355 28 96.4 32 ....T....................... TGCTGCGCAATGGATGCCGCCGCCTGGTTGCC 4716415 28 96.4 32 ....T....................... TGCGCGAAACCAGACCAGCGCACGCGCGTGGG 4716475 28 96.4 32 ....T....................... GTGGCGTCGTCGTTCGTGATCGCGGCGCGAAT 4716535 28 96.4 32 ....T....................... TCGTTATTATTCTCACCCGCCCGGGTAAAGCC 4716595 28 100.0 33 ............................ AACCCGGTCGCAGTGTTTAACGCACTGGTCGAA 4716656 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 4716716 28 85.7 31 A..........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [4716740] 4716776 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTCTCGCCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTACA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //