Array 1 294019-295999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDN010000023.1 Salmonella enterica isolate 0165_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 294019 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 294080 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 294141 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 294202 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 294263 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 294324 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 294385 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 294446 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 294507 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 294568 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 294629 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 294690 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 294751 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 294812 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 294873 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 294934 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 294995 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 295056 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 295117 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 295178 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 295239 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 295300 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 295361 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 295422 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 295484 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 295545 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 295606 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 295667 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 295728 29 96.6 32 .........................G... TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 295789 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 295850 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 295911 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 295972 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 312132-313736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDN010000023.1 Salmonella enterica isolate 0165_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 312132 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 312193 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 312254 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 312315 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 312377 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 312438 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 312505 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 312566 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 312627 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 312688 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 312749 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 312810 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 312871 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 312932 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 312993 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 313055 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 313158 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 313219 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 313280 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 313341 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 313402 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 313463 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 313524 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 313585 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 313646 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 313707 29 96.6 0 A............................ | A [313733] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //