Array 1 1051128-1051766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041678.1 Escherichia coli strain ESBL 15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1051128 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 1051189 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 1051250 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 1051311 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 1051372 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 1051433 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 1051494 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 1051555 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 1051616 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 1051677 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 1051738 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CACTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCGTATTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTAATCAATGGATTAAGTAATTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTAATGTTGAATTAATATCTATTAATTTTTCTTTAGGTTAATAGTTTGTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1067265-1068514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041678.1 Escherichia coli strain ESBL 15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1067265 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 1067326 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 1067387 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 1067448 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 1067509 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 1067570 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 1067632 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 1067693 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 1067754 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 1067815 29 96.6 32 .............T............... ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 1067876 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1067937 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1067998 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1068059 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1068120 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 1068181 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1068242 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1068303 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1068364 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1068425 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1068486 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //