Array 1 44469-42784 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCTR01000037.1 Streptococcus agalactiae strain DK-PW-162 ctg7180000006239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44468 36 100.0 30 .................................... AGAGGTGAACAGGACTTGATTGATAATCCT 44402 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 44336 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 44270 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 44204 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 44138 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 44072 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 44006 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43940 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43874 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 43808 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 43742 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43676 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 43610 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43544 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43478 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43412 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 43346 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 43280 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 43214 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 43148 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 43082 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 43016 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42951 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42885 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42819 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //