Array 1 15303-14495 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUE01000161.1 Providencia alcalifaciens strain wls1925 4085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15302 28 100.0 32 ............................ GTAAAGATAATCGCATTGTTACAGTCGGGTTT 15242 28 100.0 32 ............................ ACAATGTTAACTGACGGATCTACTCAGACTTA 15182 28 100.0 32 ............................ GACTAGAAACAGATGTTTTGATATCTCATTGT 15122 28 100.0 32 ............................ TAACTATTTCAACGTTACACCAGGTGAAGGTA 15062 28 100.0 32 ............................ CATATAGTAATTGACTCTCTTAATTTCTCCTG 15002 28 100.0 32 ............................ TCATGATGACGGTAAATCAGAGTCAGCAACGT 14942 28 100.0 32 ............................ TTTGAAATATGTGGAAAGAAATAAATATTACA 14882 28 100.0 32 ............................ AATCATTGCATATACGCTTGAAGAGTTGGGAA 14822 28 100.0 32 ............................ TTGCAACTTCCTCAAGCTCGTTTCCACGCTCC 14762 28 100.0 32 ............................ AAAACACAAGTTGATTAAGCACAGCCGCTAAC 14702 28 100.0 32 ............................ ATTACTCGCCGCTTGGAATTTCCTTGCGAGAG 14642 28 89.3 32 ...........C.T..........A... AGCGATCTATCGATTATGAGTCGAGAGCTACT 14582 28 89.3 32 ..GA......A................. TTTGTGGTTCAACGCTTCATCTTACTAACCTA 14522 28 75.0 0 ..........TCG....T....A.A.T. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCTCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : TCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAGCGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAAAAGACCTGAATAATAGAACGGGTGTAATACTGTGTTATCTGACGACAAACATCATAGACCAACAGATTAATTGGAGAGCGCCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGGGGGAAACCGACTACAAACACAGATAGCTGAGGGGTCATTCGGTTAAGAATGCCGAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 24457-24009 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUE01000161.1 Providencia alcalifaciens strain wls1925 4085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24456 28 100.0 32 ............................ GATAACTGGAACACCGCTAGCGTCTTTAACGT 24396 28 100.0 32 ............................ TACCATCATTCATGTTACCGAAAGATTTAAAC 24336 28 100.0 32 ............................ ATCTTCTGAAAACCCAAAAATAGCGCCTGATT 24276 28 100.0 32 ............................ CAAAAAACCACCGCTATTAATACCTTGATTCC 24216 28 100.0 32 ............................ TTCTAAACAAAGCAGCATCTGGATCTGGTCTT 24156 28 100.0 32 ............................ ATAAGTTGACGCATTGCATCACGATCGCCATT 24096 28 100.0 32 ............................ CAGTGTGTATGGTGCTCGCATTAACTCTGAAC 24036 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTAATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCGGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATGGTGTCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTAATAAACAACAGGTTATTGAACTACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : TCGATAAGCCACTATTATTTTTCTTAAACTATTAACCATAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAATACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //