Array 1 1061-1661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEE010000020.1 Clostridium sp. CF011 contig00020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================== ================== 1061 30 100.0 82 .............................. CTTTGGACATAGTAGCACTGGTGTAAATGGTCCGTAATTATAAAACATATCAAGTAGGAGAAGAAGCTAAAAAACCATACAT 1173 30 100.0 34 .............................. TTAAAAGATTCACAACAAGAAATACCACTTTCAA 1237 30 100.0 36 .............................. CGAAGTTAAGAAAATTCCTTGGGACGATGGACATTA 1303 30 100.0 37 .............................. TATGGTAGTCAAAGTTATAATTATTCATACTATTTTC 1370 30 100.0 36 .............................. TACTGCAACATTTCATTACAAGCTAATCTGACGTCA 1436 30 100.0 36 .............................. TTGGATGTCCTTAGATGTTTTTGTTACTCCTGTTAA 1502 30 100.0 35 .............................. GCTATTGAAGCAAGAGTAATAGCATGGTTTGCTGG 1567 30 100.0 35 .............................. TACATTATTAATGTGTAAAACTATAACAGGAGCAA 1632 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================================================== ================== 9 30 100.0 42 ATTATAAAACATATCATGTTAATTATTAAT # Left flank : TGTACATAGGTTTAAAAAGTTTTCTGCGCTAAGTTTGCCTTTTCTTTTGGTGAAAAGATGTTTTTCGGCCATCCTTTTTATTGTTTCAGAGTTGTACAAATTTTGTATGTTTTTTATTATCATCCTAATTTTTTTGTGCATTCTATGATACCCCTTCTCTAATGTATATTTTAAAGTTACATTAGATATCATAGCATATATACAATATTTGGATTTCTTAGGTTTGCGGCTATGGACCCCATAGAAGAAACCGGAAACAGTTTCTTCTTGCTAATCTGTTCCTAAAATGAATGTTTAATTCTATAGCAATAGCAATCTTGCTTTTCCCTTATATTTACTACATTTAATTAAAAATGAAGTCTTTGTCTTTGATGAAATACTTTTACCTTTCCTGTCCATCCAGACTTCTTTATAATTGTGATATATCCCCCCTTAAATGCTTCAAATCATGTTAATTATTAATGTATAAGCGTAAAAGTTACTGCAAACCATATTTTTTA # Right flank : TGACTGATGTTAAGCCATTCGTTAAAATCCAAATCCCTTATAACTTCACTATCTTAGCCCTTTTTAAGAGAATTCACCAACCTAATTTCATTATTAAGAATGTAGTTATACCAATACCTACCTCATATCGGTTGGTAAATTCCTATAAAAATAATCCTACCTCACTAACAAACTTTACTAACTCTAATGTACTACTCTTAGTAAGTTCCCCTTCGTTTAAATTATCAAAATAGCTGGTTCCTTCTTGAACTATATATAAATTCCCTACCTTTTCTAACAGTATATTATTTTTAAATTTATACGTGTTGATGTTATATATATAATTGTTTAGTTCCTTTCTAATACACGTTGATTTAACTTGTTTTTCAGTATATTTCAAATCTGATTTTTGAGTTTCTAGATATTCCTTAAATAATTCATCAGCACCCCTCTTTCCTTCGTATTTGCATATAAACAGGAATGAATAATTTTTAGTATCTATTAATTTCATATTTTCTTGT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAAAACATATCATGTTAATTATTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 5181-4244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEE010000020.1 Clostridium sp. CF011 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================== ================== 5180 30 100.0 34 .............................. CACCCTATGTAATTCCTATGTAATTCTTTTGCTT 5116 30 100.0 36 .............................. ATTCTTTTCACATCAACTACTTTTTTAATTTTTCCT 5050 30 100.0 34 .............................. TGTTTTATTTGTTTTCTTAATATATTATATGCTA 4986 30 100.0 34 .............................. TTACGTAAACATATTGCAACTTACGTAAGAAAGT 4922 30 100.0 36 .............................. GTCACAGTCTCATACATGGTAATAGCATAATAATAA 4856 30 100.0 34 .............................. ACGTTATAAACTTCATCGTAGCCTCTACTAATAA 4792 30 100.0 36 .............................. TATTCTAAAATTTCTTCATATGTTAACCACTCTGGC 4726 30 100.0 37 .............................. CGTCTTATTGATACCTTTGTTCCATTTTCAAATTTAG 4659 30 100.0 36 .............................. GGTTAATACATGAAGTTATAATGCCTATGTGTAAAC 4593 30 100.0 36 .............................. ATGGAAAACATAATTATAATAATTTTGGCTTAATTA 4527 30 100.0 36 .............................. CCTGTTAATTCCTCAGTTCTACACATAAGTTCAACT 4461 30 100.0 36 .............................. CACAACCCATCATATAGGGTTTCTCCTGTTGTTTCG 4395 30 100.0 91 .............................. ATGCTCAAATTATCCTTATTTTCAGTATAGTGACTTCATTAACTATGTTTTATAATTACGCTAAGTTGAGTGCGGGACTTGAAAGAACTTA 4274 30 73.3 0 ....G.........AT..T..GG.GC.... | T [4246] ========== ====== ====== ====== ============================== =========================================================================================== ================== 14 30 98.1 40 ATTAACTATTAACATGAGATGTTTTATAAT # Left flank : TGGAATGAGTTATGCTATTTATTACAAAAACACGAAAGTAAATATCCTTTGTATCTAGGTAATAACAGTTATAAAGCAAAAGTTGATGGGTTTGAAATAGTTAATTTAGATGAAGTTGAGGATACAGATGATATAACCATAACCAGTATATTTAAGGAAGAAATAGTAGAAGAATTTAACGAGTATACTGAAAGTGATATGGTGATTCCTTATAATTTGGAAATATACGCTCCTGGCACATTAAATGAATTGACACTATATGAATATAAATGGTTTAGATTTACTAATTTAATGGTAACTACTAAAGATAACAAGAATTTATATTCATATGATAATAGTATATTAGGTTTTATATAAGATATTTTACCAACCTAAACGCTGAAAATGACTATTTGCCTATATTCCTAAAAATGACGTTTGGTTGGTAAAAGTATTAAAAAGTGTTGATTTTACTAAGGTTAAAGCCAGTTAGTAAAATCAAGGATGGCTTGGTTACAGTC # Right flank : AAATTAAAATAATAAAAAAAGGGGGGGATAAAATGTATTTAAGTAGACCAAACGAAACACTAGACAAACACATAGACTCAGTGTTAAGACAATTTAAAAACTTAGATAAAAGTAAGAATATAGATTCAATAATAAATAATATAATAAACAAGTTATGTAAAGAAAACAAAGATTTAATTGGCCAAGAAAATGATGTGAAAACGTTAGTATTAGAAATGACTAAATTGCATGATGAAGGTAAAAAGAATCCTTATTTTCAAGCTTATTTAGGAAATTTAGAATATGCAAGTTACAAATTTACACAATTAAATAAACACCACACAGAAATAGGTGCTATATATTACTGTATAACTATGTATAACAATTATGTAAGCACGGTTAAAAGACCTGTACAAGAGGCATTAAAAGACATTATACTATCTTTGGCATATAACATTTATAGACATCATAGCAGCCTGGAGGATTTAGACAAGTCTGTATTCATTGAGAAATTAATATAT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAACTATTAACATGAGATGTTTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //