Array 1 128471-126612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSU010000008.1 Escherichia coli strain 10B1-10 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128470 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128409 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128348 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128287 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128226 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128165 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128104 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128043 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127982 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127921 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127860 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127799 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127738 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127677 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127616 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127555 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127494 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127433 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127372 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127311 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127250 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127189 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127128 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127067 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127006 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126945 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126884 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126823 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126762 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126701 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126640 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155114-154170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMSU010000008.1 Escherichia coli strain 10B1-10 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155113 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 155052 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 154991 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 154930 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 154869 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 154808 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 154747 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154686 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154625 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154564 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154503 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154442 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154381 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154320 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154259 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 154198 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //