Array 1 6067847-6069277 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBV01000001.1 Saccharopolyspora erythraea NRRL 2338 strain DSM 40517 Ga0074755_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6067847 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 6067920 36 100.0 37 .................................... CTCCAGCATCGCCGGGTCCTTGAACAGCGCCTCGATC 6067993 36 100.0 37 .................................... CAGGCGTTCGGCGGAGAGCAGGCCCGGGAGTTCGGGC 6068066 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 6068139 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 6068213 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 6068285 36 100.0 41 .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 6068362 36 100.0 35 .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 6068433 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 6068505 36 100.0 37 .................................... ATTCGGCCTGGGGATGGATCTCAGCCTGCTCGCGTAC 6068578 36 100.0 38 .................................... GCCGCATACGCAGGTCCAGTTGCCGTCGGCATCGACGG 6068652 36 97.2 36 ..C................................. AGGAACCACGCGATCAGCGCGCCGGGCAGACCGTTC 6068724 36 100.0 41 .................................... CGGCGCCGGTGGGTGCGGAGACGGACGTTGGTGTGCAACGC 6068801 36 100.0 35 .................................... GGCACGTCGCTCGCCTGCGATGTGCGCAGCTTCCT 6068872 36 100.0 36 .................................... AGTACGCAGGAGTCCAGCCGTGAAGATCCAGACCCG 6068944 36 100.0 37 .................................... ATCGGGTGTGCGTGCTTGCTGATTGGTGCCGGTACGA 6069017 36 97.2 36 ..................C................. CCTACTACAACACCGGCAACGTCAGCTCGTTCTCGA 6069089 36 100.0 41 .................................... GTCGCGGGCGAAGTCGTGGCTCCGGTGAATCTCCATCTCAG 6069166 36 97.2 41 ...................C................ CCACATCGAGAGATCCCCTACTACAGCGTGTAGCCCGGCAG 6069243 35 88.9 0 ......T.................-..T.C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 98.9 38 CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Left flank : AAGGTCTGCCAAGAACACGGTGCCCGGACGCTGCTCAGCCTCCGCACATGGTCGACCACAATCCCGGAGACCAGGGAGGCTTTCACCGCCGTCGTCGAACAAGCCTGCCGCGAGTGGCGCAAGCACACGGAAACGACGGGGGCGCAACGACATCGACTCATCTTTCTCAGCGGCCCCATCCCAATCGCCGTCGCACTCGGCGCTCGATTCGCCCCCGAACGGGGCCGCTGGACCGCCTTCACCTTCGACCGAGACACGAGCCGGTACGTACCCTTCCCAACCCGGGATTGACCTGCAGCAGCCTCTACTCGGATGGCCCCACACGCGAGCGGCCCAGCGACGCCACCACCAGGCGGGGGCACTCGCGGCGAATCACCGCAGGTCAGAAGCGAGAGGCAGGCATGTAAGATCCACATCGGTGGACGCTAAGATCGACACCGAGCACCCGCTCGAAACGATCTTTGAAAAGCCAGGACACGGGCACCGAAAACAAGGAGCCC # Right flank : CTGCGCATAACCACGATGCGCCGTGATGAGCATCCAGTTGCCACCACGAGCGTTCCGGGCCGATCCTCCGCTTTCCGCAGCCGGGTGCTCCATACTTGCGTTCCTTACGATCACGCTGCCACGGGATCTTCAGGTACGTCGCTGTCTTGGCCTCTCATGTTGGCCTCTGCATCAGCCAATGGCTATTGCTGGCTTTCCAGCCGCCCGTCGCGGCTGCTCCGGTGAAAAGCTCACCGGAGGGGGTGGGTCTGATGTGGCCGCTTGCAATCCACTATCGAGTGAATCCCGAGATTCGGTGTGCGGGTGCATCATCCCTGGGTGTCACAGCCTGGCACATACCTACCTACAGGAGATGATCTCCCATGGATCCGCCATTGCCCATCGGCGCCCGCGCGCTCAGCGACTTCCGGTTTTGTCCGCGGCTGTTCCACTTGGAGCACGCGGAGGGCTACCGCTTCGACAGCGAGGAGATGCGCCTCGGACGTCACGTCCATGCCTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCACCGACGCGCAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.90,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 6074369-6075470 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBV01000001.1 Saccharopolyspora erythraea NRRL 2338 strain DSM 40517 Ga0074755_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 6074369 36 100.0 34 .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 6074439 36 100.0 35 .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 6074510 36 100.0 35 .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 6074581 36 100.0 37 .................................... CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTCAG 6074654 36 100.0 51 .................................... ACGGAGTAGAACGGCACCCCGGGCACCCCGGGGTTGAAGTAGTACTCCGCC 6074741 36 100.0 39 .................................... ACCAAGCCAAGCTTGTCGCCGAGCACACCACGCACGAAG 6074816 36 100.0 59 .................................... TCCTGGGCCTGCTTGGTGAACCACAACGGCCTGCTCGGTGAACCACAACGGCAGCACAG 6074911 36 100.0 43 .................................... CAAGAACGCCTCGGAGATGATCCGCGAGTGCGGCTTGATCCGG 6074990 36 100.0 38 .................................... CTGCCACCAGTAGCGCAGCAGGGGGAACGCCAGCTCCA 6075064 36 100.0 37 .................................... TTTCCGAGGCGAAGGTTTCTGGTGTTCGCCATGTCGC 6075137 36 100.0 40 .................................... AACTCGGTGTCATAGAAGTACTTCATCGTTTGAGTTCTTG 6075213 36 100.0 37 .................................... TGTCCTGCGCCTCGTCCAACAGGATCACGTCGTACGG 6075286 36 100.0 42 .................................... CACGTGCCAGTGCGGGTCACCGATCGGCGCGTCGCCGACCGG 6075364 36 97.2 35 .........................G.......... CTCGGAAGGTTGGCCATGCGTGGTCCGGGCAGGGA 6075435 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================== ================== 15 36 99.8 40 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CGGCGCCGCGCCGGAGACGCTCGGCGCGCACCACTACGACCTGCTCGGCATCGACGATCCGCGACTGCACAATGTCAACGTCCTCGACCAAGACGAGGCAGTATCAACCGAAGAACTAACGGAGGCCCAAACCCTCTGCGAGAAGCTGCATATCCCAACCGCATTCGCGGCACGCGTGGCGATCGGAATCCGCGGGCGAGGAACCTGACTCCACCCCGAACAGCGACTTCGCCCCCACGACACAGCCCGCGGCGACCGCAGCAGTCACAAAGGATCGCTGTAGTCACGGCAGTCACAACATGCAGCTCGGACCACCGGATCGTCCGCGAGCGGTCCGGCCACGACACCGCCAGGCAGAGGCGCTCGCAACGGGTTACCCCTGGTCAGAAGCGAGAAACAGGCATGTAAGATTGACATCGGCGACCGCCGAGATCGCTACCGAGCATCCACTCGAAACGATCTTTGAAAACGCAGGACACGAGCACCAACAACAGGGAGCC # Right flank : CACGTCCACGCCGAGGTAGTCGGTGCCGAGGCGATCGTCGGTGCTGTCACCGGCGCCAAGCTGTCAACGGCGGCCGAATGTGGACCCGGCTGCGGCGGCTGAAAATGGACCCACCCTGGTTGTTGATGTTTAGTCGTTGGTGTTGGTGGCCGCGGGCACGCGGCCGAGGTCTTGGCGGTCTTTGAGGCGGTAGCTGTCTCCTTTCAGTGAGATGACTTCGGCGTGGTGGACGAGGCGGTCGATCATGGCGGCGGCGACGACGTCGTCGCCGAAGACCTCGCCCCAGCGGCCGAAGGGTTTGTTGCTGGTGACGATCAGGCTGGCTCTCTCGTAGCGGGCGGAGACCAGCTGGAAGAACAGGTTCGCGGCTTCGGCTTCGAACGGGATGTAGCCGACCTCGTCGATGATCAGTAGCGGGATCCGGCCGAGTTTGACCAGTTCCTGCTGGAGTCGTCCGGCGTGGCTGGCCTCGGCGAGCCGGGCTACCCACCCGGCGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 6077702-6078175 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBV01000001.1 Saccharopolyspora erythraea NRRL 2338 strain DSM 40517 Ga0074755_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6077702 36 72.2 38 .CCGTC.GC.ACA....................... ACCATGCCCGGGTGCGCATCCGCACGGCCGCCGACCTT 6077776 36 100.0 42 .................................... GCCTTCACCTTTGCCGGCATCCGGCCGGAGTTGTTCAGCCGG 6077854 36 100.0 35 .................................... CCAAAACCCTGCGTCGTGCATCAACCAGTACCCGG 6077925 36 94.4 37 .......A...........C................ ATCACGATGGCGGTAGAGCTGTCGGTGTAGTCGGCGA 6077998 36 94.4 35 ..............C........C............ AACCAGAGGGAGAGGGCTATGGGCAGCGGCCACAT 6078069 36 91.7 35 ....A.....G...C..................... TGGTCACGGAACTGGCCCGCACCGAACTCGCCGCA G [6078090] 6078141 35 75.0 0 A..GG.T..A.A..TG..........-......... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 89.7 37 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CCCGACACCATCACCAGCACCGGCGGCCGCCCCACCTGCCCGAACCCCAGCGGGATATCGACCGGCGGGAACCACAGGTCGCATTGGGCCAGCTCACCGGGCTGATACACCGTCCGCGACACCGGATCCGGCGGCAGGAACAACGGGCGCAACTCCCGCACCCGGTCCTTGAGCACCGTCAGGCCCCGCTGCCAGCCGATCCTCTCGGCGATCACCGGCACCGGCATCGTCGGCCACTCCGCCAGCAACGCCCGGATCTGCGGCTCCACCGCATCCACGACCGAGCCCTTCGACGGCCGCTGATACCGCGGCGGCCCCTCCGAAGCCAACGCCCGCCGCACCGTGTTCCGCCCGACACCCAGCTTCCGGACGATCGCCCGAATCGGCATGCCCTCACACCGATGCAACCGACGGATCTCTGCCCAGTCCTCCACGCTGATCACTCCCTACTTGTCAGGGAGTGGGTCCGATTTCGCCCGCCCACACCGGGTCAGGATTCA # Right flank : CGAGATAGTGTTTCCCAGCGGTACCGCGATCCGGCGCTGGTACGTCACCGTGCCCAGCGACGCTCCTCATTTCTCGCGGTAGCCGTCCGAGTTCAGCTATGGGTCGGCAGGAACAGGCCCATTCCAAGATATCTCTGTGATCCCAACAGAACCGGTCCTGTTGCTGGCTCGGCAAACGTGATTTTCGCGTGGGTGTACGGGCGGTTGTCTCGGCGGGGTAGTTGCGATCGGCCGAGGTCGGCGGCTCCGTGGACGAACGGGTTCCGGCTCGTAGTCACTTCGATCGGACTGGGGAGTCCACTTCGGATGCATGTGCGGGCGATCTCCGCCGCTTCCCTGCCCTTACCCGGGTAGCGATCCAGCACCATCGGCGTCACCGTCGTCCAGCTTCGGGACGGACCCGACAACCCAGCCGTGACGGGCTCGGCATCCTGGGGCCGCAGTCGCAGCCGTACACCCGGCAAGTCCAGATGAAGTGGTTTTCCCGTTGTCAGCGCCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //