Array 1 54554-52126 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHD01000001.1 Moraxella catarrhalis strain COPD_M70 NODE_1_length_307683_cov_25.6601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 54553 28 100.0 32 ............................ AGCGTCTCACACTGCCTTGTTTACCTTGTATA 54493 28 100.0 32 ............................ ATTAAATAGCTGAGCCATGACTTCATCTACAG 54433 28 100.0 32 ............................ GTCGTTGGACGCTTGCCCACCCCAAAATACAT 54373 28 100.0 32 ............................ TACTATACCTGATTCTTATTCTGTGAATTATG 54313 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 54253 28 100.0 33 ............................ AAGTGATGGCGAAAACTGGACAATCATTGATGT 54192 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 54132 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 54072 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 54011 28 100.0 32 ............................ TAAACCCAATACGAAAAGATGCCAAATTTTAT 53951 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 53891 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 53831 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 53771 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 53711 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 53651 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 53591 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 53531 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 53471 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 53411 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 53351 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 53291 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 53231 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 53171 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 53111 28 100.0 33 ............................ GGCTTTTTAAAGAATTAAACCGTTGGACGATCA 53050 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 52990 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 52930 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 52875 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 52815 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 52755 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 52695 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 52633 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 52573 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 52513 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 52453 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 52393 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 52333 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 52273 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 52213 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 52153 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //