Array 1 5335-6950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZA010000012.1 Salmonella enterica strain FUA1976 NODE_12_length_131233_cov_37.103188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5335 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 5397 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 5458 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 5519 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 5580 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 5641 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 5702 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 5763 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 5824 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 5885 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 5946 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 6007 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 6068 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 6129 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 6190 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 6251 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 6312 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 6373 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 6435 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 6496 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 6557 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 6618 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 6679 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 6740 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 6801 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 6862 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 6923 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23233-25130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZA010000012.1 Salmonella enterica strain FUA1976 NODE_12_length_131233_cov_37.103188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 23233 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 23294 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 23355 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 23416 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 23478 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 23539 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 23600 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 23661 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 23722 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 23783 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 23844 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 23905 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 23966 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 24027 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 24088 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 24149 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 24210 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 24271 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 24332 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 24393 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 24451 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 24512 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 24573 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 24634 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 24695 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 24756 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 24817 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 24878 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 24979 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 25040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 25101 29 93.1 0 A...........T................ | A [25127] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //