Array 1 25771-24679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZI01000057.1 Neisseria meningitidis strain MRSN431015 MRSN431015_contig00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25770 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25704 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25638 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25572 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25506 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25440 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25374 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25308 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25242 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25176 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25110 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25044 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 24978 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24912 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24846 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24780 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //