Array 1 16440-17200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFD01000120.1 Salmonella enterica subsp. salamae str. 3588/07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16440 29 100.0 32 ............................. CCTCATTGATGGCTGTTTTTGTCAGTTTTCTG 16501 29 100.0 32 ............................. CTTAACCCCTTTGTTCCACGGCACCGTTAAAT 16562 29 100.0 32 ............................. GTTTCTCCGGTACGCTCAGGATCAGGGCGCAT 16623 29 100.0 32 ............................. GCCTCCAGCTCTGGCTTGCTTGTTCCTGATTT 16684 29 100.0 32 ............................. CCTACGGGCTGACGAACTATTTCACCCTTGAC 16745 29 100.0 32 ............................. CGGAAAATCAGCATTAACAGGCTGGCTGTTGA 16806 29 100.0 32 ............................. CCAGGCTAAATTCCTTGCAATAAACTTCATAT 16867 29 100.0 32 ............................. CTATCAGCATGATGTCGCCGGGATGGGCTGTA 16928 29 100.0 32 ............................. AATATTCATTTTATTACAAGGTTAAAAATGAA 16989 29 100.0 32 ............................. GCATCATTCGATCCGGTAACATCACGCACCGT 17050 29 100.0 32 ............................. TAGGGCAGTGAGTAATAAGAACACTCAAATGA 17111 29 100.0 32 ............................. AATATTCATTTTATTACAAGGTTAAAAATGAA 17172 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCCCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATTTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 858-464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFD01000135.1 Salmonella enterica subsp. salamae str. 3588/07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 857 29 100.0 32 ............................. TAGGGCAGTGAGTAATAAGAACACTCAAATGA 796 29 100.0 31 ............................. AATATTCATTTTATTACAGGTTAAAAATGAA 736 29 100.0 32 ............................. GCATCATTCGATCCGGTAACATCACGCACCGT 675 29 100.0 32 ............................. TAGGGCAGTGAGTAATAAGAACACTCAAATGA 614 29 100.0 32 ............................. GTTATCTGCGGCCTGTTTCAACTTCTGCCTGA 553 29 100.0 32 ............................. GCGGCAGGATGAATAAGCATATCGAGAGAATG 492 29 72.4 0 ..................CT..GTTTGT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCGGCATCATTCGATCCGGTAACATCACGCACCG # Right flank : GGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCACCCTTCCCCGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGTATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGAGTTATTCGTCGCTCCGCTCCTCACTCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCACTCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44807-46424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFD01000102.1 Salmonella enterica subsp. salamae str. 3588/07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 44807 29 100.0 32 ............................. TTGAGGGCGAGGTCGTTTTTTTTATGGTGAGC 44868 29 100.0 32 ............................. CATTTTTACGGTTAATTAATTATTCAGCAGGC 44929 29 100.0 32 ............................. GGTCAGTGAATTACAACAGGAGGACTGAAAAA 44990 29 100.0 32 ............................. GAGTACAACATCAGTCTTCCGCCGATGTTGAA 45051 29 100.0 32 ............................. GGGCGAACCATTGCTGACAGGTTCAATAATCC 45112 29 100.0 32 ............................. ATACAGAATAAAAAATAGCTATCTTAGGCTTT 45173 29 100.0 32 ............................. TCAGGCAAAAAAAACGTTCAGTTAATTATTGG 45234 29 100.0 33 ............................. GTTTGTCAGCATTCCGACGCTGCGCAGGGATGC 45296 29 100.0 32 ............................. TTTTAGTTGAGCCATTTTGGTAGCTGCAATCC 45357 29 100.0 32 ............................. CGTTCGGATAGTCGAGTGAGTTCAATCAGCGC 45418 29 100.0 32 ............................. GCCGAAACTTAGCCCTGATACCGGACGATAAG 45479 29 96.6 32 ...C......................... CACACTTTTGGTGACCCGTCGTGATTCTTCCC 45540 29 100.0 32 ............................. AGTGGTGCGCACCGTAAATACTACAAATCATT 45601 29 100.0 32 ............................. CGCCCCCGGTTAGTTGTTCACTGCGCTGGAAA 45662 29 100.0 34 ............................. CGGCGTATCTGGGGCCGGACGGCACGCTGCCAGC 45725 29 100.0 32 ............................. AATTAATTTAATCACGCCAGCCTCACAATATA 45786 29 100.0 32 ............................. TTGACCACAACGAATACACAGGGAACGGCGTA 45847 29 100.0 32 ............................. GTAACGTTGCCGTTCTCTACGATATTGACCTG 45908 29 100.0 32 ............................. AGTTTTTACAATCAAATAGAATCCAATTTCAA 45969 29 100.0 32 ............................. CCGATTCACCAGTTCACGCTCTCGATCATGCA 46030 29 100.0 32 ............................. CTTTCCGGTAGAGCGGAATTGAGAATGCTTCA 46091 29 100.0 33 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGAATAGC 46153 29 100.0 32 ............................. AATGGCGGAAATAGACGCACGCGGACCCGGTA 46214 29 96.6 32 ............................C TCGGTCCATACAACCTCATTAGCGTTAGGATC 46275 29 100.0 32 ............................. AGATGGAAATCCAAAATGAACAATCACAGCAA 46336 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 46397 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================== ================== 27 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTCATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63724-66560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFD01000102.1 Salmonella enterica subsp. salamae str. 3588/07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63724 29 100.0 32 ............................. CCACTATTATTCATATTGTGAGTCACCTTACT 63785 29 100.0 32 ............................. ATGTATTCACTCTGTTTACCAGTACCCTGTAT 63846 29 100.0 32 ............................. TCAATGGACATCGCAAAATGGGTTTGCTCCAC 63907 29 100.0 32 ............................. GTGGTACCGAAATGATTTATCCAACCAGTACC 63968 29 100.0 32 ............................. CTGGCGTGGGATGGTTTTATTAACTGTGCCTC 64029 29 100.0 32 ............................. TCGTGTACCGCAGGAACTCAGCGATGAAGAGC 64090 29 100.0 32 ............................. GCTTATGGTTGCCGAGCAGGTGAACTATTATA 64151 29 100.0 32 ............................. TTCTCCAAACGTCATCCGACCGTGTGTTCGTA 64212 29 100.0 32 ............................. ATTTTTTCTGCCCTCGACTGACGATTCTGACG 64273 29 100.0 32 ............................. CGGGGTGTGTCATGCCTGAACTGGCCGGATTT 64334 29 100.0 32 ............................. TTTTCATTTCAGATAAGAGCACGCACGCCTCC 64395 29 100.0 32 ............................. CTCAGAACTCCCGTAGAGCAGCAGGGGAATCC 64456 29 100.0 32 ............................. GTATTTAGCGAGGGTTTTTGCACCGCTTGCGA 64517 29 100.0 33 ............................. CGCCGCCACTGCATAACACAAAACCCGTTTCAC 64579 29 100.0 32 ............................. AATGGCTGAAACGGTTGCACTCAGCGAGAAAA 64640 29 100.0 33 ............................. GGAGTTTCACCAGCGACTGGTCAATTGCATCTT 64702 29 100.0 32 ............................. TGTAAAAATGTGGGGGGATAGTGCCTTTTCGA 64763 29 100.0 32 ............................. TTGCTCACTTCCCTGTTTGAGGCGTGGATTTA 64824 29 100.0 32 ............................. CTCCGGCAACAATATTGCCGGTAAACGATTAT 64885 29 100.0 32 ............................. CATACATTGCCGAGTTCGACCGCATGGAGAAC 64946 29 100.0 32 ............................. GGTTGGTAACAGGTTGGGTTGCGTATTAGAAA 65007 29 100.0 32 ............................. AGTTGTTTGTCGCGGGATTCAGCCTGGCTGAA 65068 29 100.0 32 ............................. GCGAGAACGTTGGTAGTGTTAACTATAAAATG 65129 29 100.0 32 ............................. ATTTTGCGTCTTGGCGACAATTTAATGTACGA 65190 29 100.0 32 ............................. GTGATAGCAAGTCCGGATTCCGTGACAATAAT 65251 29 100.0 32 ............................. CAGGTATACAACAATTTGCAGAACTGGATCAG 65312 29 100.0 32 ............................. CGCCGTAAAATCGAACGGGCGACGGTCCTGGA 65373 29 100.0 32 ............................. GTCAGTTCAACAAACACCACGACGCGGGAATT 65434 29 100.0 32 ............................. TCACCGGCGTCGATATGAACCGCAATAACCAT 65495 29 100.0 32 ............................. AACACTACCGCAATCGCTATCGCCGCCAATAT 65556 29 100.0 32 ............................. CTGACAGTTACGATGCTTTCTATCTGCTTCAC 65617 29 100.0 32 ............................. CCTTGCGGCGTTTCTGTAGTTCGCGCAGGGCC 65678 29 100.0 32 ............................. GCTGGTTTTAACCCACTGCTAGTAAAACGATA 65739 29 100.0 32 ............................. CCTATATTCTGGAGTTCGGTGATAAATATATT 65800 29 100.0 32 ............................. TTAGGGAGAGAACTAGGTTACTCACAGACCAG 65861 29 100.0 32 ............................. CCTCCGCATCGAAATTTGCGGAGTGGATATTA 65922 29 100.0 32 ............................. CACTCTCAGATTGGACTCGTCATTGTTGTCAA 65983 29 100.0 32 ............................. GTCATATGCCAGGCCAAGTAGCGCCTCCATCT 66044 29 100.0 32 ............................. CAAGAGAGTTTGTCGGTGATATCTGCGGCTCA 66105 29 100.0 32 ............................. GTGATAGCAAGTCCGGATTCCGTGACAATAAT 66166 29 100.0 32 ............................. CAGGTATACAACAATTTGCAGAACTGGATCAG 66227 29 100.0 32 ............................. CGCCGTAAAATCGAACGGGCGACGGTCCTGGA 66288 29 100.0 32 ............................. CAGTGAAGGCCGGTGGCGAGGAATGGCAGTCA 66349 29 100.0 32 ............................. CCCTTTCTCCATACTTCATCTGAATAGTTAAT 66410 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 66471 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 66532 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 335-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAFD01000053.1 Salmonella enterica subsp. salamae str. 3588/07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334 29 100.0 32 ............................. GCATCATTCGATCCGGTAACATCACGCACCGT 273 29 100.0 32 ............................. TAGGGCAGTGAGTAATAAGAACACTCAAATGA 212 29 100.0 32 ............................. AATATTCATTTTATTACAAGGTTAAAAATGAA 151 29 100.0 32 ............................. GCATCATTCGATCCGGTAACATCACGCACCGT 90 29 100.0 32 ............................. TAGGGCAGTGAGTAATAAGAACACTCAAATGA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TACAAGGTTAAAAATGA # Right flank : G # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //