Array 1 3863-2164 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGP01000002.1 Lactobacillus iners strain UMB0033 ERR1203621.17957_1_33.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 3862 29 96.6 32 ............................C ATTGATTGAAGACATTGTGGACATGGTTCGCT 3801 29 96.6 32 ............................C TGGAATGGGACGGATTTTTACACCTCAGGGGA 3740 29 96.6 32 ............................G CCACTTTTTAAGATTCAGACAAGTGATAGCGA 3679 29 100.0 32 ............................. GGAGCAAGTACATATTTTCTTGTGCGAGTGTG 3618 29 100.0 32 ............................. ACGAGTTAAAATTATTAGACAAAGAAGATAAT 3557 29 96.6 32 ............................C TATGGGAAGTTTTTACTTTTCTATGTCAATGC 3496 29 100.0 32 ............................. ATAGTAGATATGACTGCAGGCAAAAAGTATAG G [3479] 3434 29 100.0 32 ............................. CGTAAAGCTCCATATGCTCAGTATGGATAGTT 3373 29 100.0 32 ............................. AACCACCCGACAAAATCCCAAATATTGCTATA 3312 29 96.6 33 ............................C CTCTTTCGTCGCAAAGCAATTTGTTGATCTTGA 3250 29 100.0 32 ............................. CACCTTCAATTGTTACACCTTGGATTGTTCCA 3189 29 100.0 32 ............................. GACATTGATGCGGATCCAACTTGCAACTACGG 3128 29 96.6 32 ............................C AGATTAATTTACGTGGATAAGCAATTCTTTCA 3067 29 100.0 32 ............................. CTTTAAGTACTCATCAGCCTCCATGTGGTTTT 3006 29 96.6 32 ............................C AAGCACTCTTCATAGCCTCTAAAGTCGCTTTT 2945 29 100.0 32 ............................. CGCCTTCAATTGTTACACCTTGGATTGTTCCT 2884 29 100.0 32 ............................. CGCCTTCAATTGTTACACCTTGGATTGTTCCT G [2867] 2822 29 96.6 32 ............................C GTTGTCTTTATTGATTTTGCCATAATGAATCA 2761 29 100.0 32 ............................. CTCGGACACGTCTTTGCGTGGTGTCTTTCTCT 2700 29 100.0 32 ............................. TGATTCCAGATATTGAGAAGAAGGGAAAGGAA 2639 29 100.0 32 ............................. TTTAAGGCGTTCCAACCTCGTTTAGTTTTTCC 2578 29 96.6 33 ............................C TCCTCCATATAGTACACATCTAACTCATGATAA 2516 29 96.6 32 ............................C ATTCATTTTCAAAACTGCCTTAATTTTATAGA 2455 29 96.6 32 ............................C CGCTAACCTGTAAAGCCTGCTCGCTATCTTTA 2394 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 2332 29 82.8 109 ....................T.A...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT C [2307] 2193 29 69.0 0 ...C..T...T......T.T...A..AAA | A [2169] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 27 29 96.8 35 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAACTGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTATGTACGTTTATTGGAGATAAGGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATATGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATATGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : GTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAATATGGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCTAAATTAGTGCTATTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //