Array 1 40995-39439 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCY01000015.1 Escherichia coli strain CFRA108 scaffold15.1_size101504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40994 29 100.0 32 ............................. CCCGTCGATGACCTTGCCGAACGGGCTGAACG 40933 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 40872 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 40811 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 40750 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 40689 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 40628 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 40567 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 40505 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 40444 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 40383 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 40322 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 40261 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 40200 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 40139 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 40078 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 40017 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 39956 29 100.0 32 ............................. ACGACGTTTTTTTTGAAGACATTTTGATTTCT 39895 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 39834 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 39773 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 39711 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39650 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39589 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 39528 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39467 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57577-56511 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDCY01000015.1 Escherichia coli strain CFRA108 scaffold15.1_size101504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57576 29 100.0 32 ............................. AATCCTCTCTTAGTTGCCAGTTGCGCGAACGC 57515 29 100.0 32 ............................. CCGCCGCGCTGGCGTCAGGCGTTCCAGTGGTG 57454 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 57393 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 57332 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 57271 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 57210 29 96.6 32 ............T................ ATACAAACGCGGTGTTTATCAATATGAATTTT 57149 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 57088 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 57027 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56966 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56905 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56844 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56783 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56722 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56661 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56600 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56539 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //