Array 1 2150821-2151175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072035.1 Akkermansia muciniphila strain Akk1576 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2150821 31 100.0 35 ............................... TCCATGCCGAAAGGGAACCATGCTATTTTATCAGG 2150887 31 100.0 34 ............................... TCCCTACCGGGGAAATTGCCACCCTAGTTAAAAA 2150952 31 100.0 32 ............................... CCTCCTGCTCCTGGACATGGGAATACCTTTCA 2151015 31 100.0 34 ............................... CCTGAATGAGCAGGCTCAGGGCGACGCCGGACTT 2151080 31 100.0 34 ............................... ATCTTACCCAGCGCGGTAAAGACTTGCTGTTTAT 2151145 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 6 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CCAACAAACCGATACGTCCCCCAAGTTGTTTCTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGGCGGATCAGACCAGTCATGAGCTATCTTATAAAAGTCGCAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAGGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGCATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGAGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAAAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2740972-2740471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072035.1 Akkermansia muciniphila strain Akk1576 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2740971 33 100.0 34 ................................. AAGTTCCGTCGTCGTTTCCCCATCCTGGTTGGTG 2740904 33 100.0 33 ................................. AGGGGGTGAATGGCGGCAAGTTGGAAACGGTGA 2740838 33 100.0 33 ................................. AGGGGGTGAATGGCGGCAAGTTGGAAACGGTGA 2740772 33 100.0 35 ................................. TTCTTCTTCTTCTTCACTGGAAGATTCAATATTCA 2740704 33 100.0 33 ................................. AGCGCGGTTGACAGCGTGAAAGCGTGCACTGGG 2740638 33 100.0 35 ................................. GAATTCAAGAGTGCAATTAGTCATCCGGCAACCCG 2740570 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 2740503 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 8 33 99.6 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : TGCTCCTGGCGGCCTTTTTGTTTTCCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGTATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCACAGGCCATGATCGACCGCACCCAGTCCCAGGGATT # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGGCTGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTGGGGTGCAGGCGTGTAGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2774262-2773314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072035.1 Akkermansia muciniphila strain Akk1576 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2774261 31 100.0 34 ............................... CCGCTCCCCGTTGAATAACTACGCCGCTCTATAA 2774196 31 100.0 35 ............................... CGATAGGGAATGGATATTGAAGGGGTTGGAGACGG 2774130 31 100.0 36 ............................... CTCTCCTTGCCGAACCTGAAATCATGGACAAGTATC 2774063 31 100.0 35 ............................... TGGGGAGGCATCGAGTTTAAGCTCAACCCCCGCAA 2773997 31 100.0 35 ............................... GATGTATGCAGTCCCGTCTTCGCGATATTTGATTA 2773931 31 100.0 34 ............................... CGGTTGCAAGAGTTTGCCCGTGCATTGTACGAAT 2773866 31 100.0 34 ............................... CTTCGAAGGTGAGACCGATGCCTCGGACATCCAG 2773801 31 100.0 34 ............................... CGGTTGCAAGAGTTTGCCCGTGCATTGTACGAAT 2773736 31 100.0 34 ............................... CTTCGAAGGTGAGACCGATGCCTCGGACATCCAG 2773671 31 100.0 34 ............................... TCAATCCTGGAAGCCCCGCGGTGAAAATTATCCA 2773606 31 100.0 35 ............................... ATCGTAGTCCTTGCGGATGATACGGCGAACGATTT 2773540 31 100.0 35 ............................... GGTGCAGACCACCTTTGGTGATAATGCTCGTCGCC 2773474 31 100.0 34 ............................... TGAATGGCGACGAGAATGAGAATATCCAGCAAGG 2773409 31 100.0 34 ............................... CGGTGGCATGGTTACAATGGGACGATTCGCAAGC 2773344 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 15 31 100.0 35 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : AAATTTTACCGCTCCCTGTAACGTGACGGCGAATATGGTGAAAATTGACAGAAAGATGGCGAATTCACCTTTGAACGCCACCCCGTTGCATCCCCATTGCAACCTGGTTGCCCCTCCCTTGAAAACGGCTTGAACTGGCCCCCCCTACTCCCCGATCACGTTCCTGGCGGCCAACTCGTCAAATACGCGGATGAACTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGTCCCTCCGGTCGTGATGCCGACCAGGGACGCTCAATGTGAAGAGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACTCCCAATGGGCAGCCGGTCCAGAACCGCCAGCATCCGGCGCAACGCGGCACCCGTGAACCCGTAGCACAGGCCGCACATGATCCGTCCGTCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //