Array 1 245792-249651 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSO01000018.1 Listeria monocytogenes strain CFSAN002263 PROKKA_contig000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 245792 29 100.0 36 ............................. GTTGAATAACCGGAAGCAAGTGGTACGTTTGTCCAT 245857 29 100.0 35 ............................. TTATCCGAATGTAATTCTTTAATGTTCAAACGATC 245921 29 100.0 35 ............................. ATCGTTGGGAACCTTATTCACGGGATGATTTTAAC 245985 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGTCATT 246049 29 100.0 37 ............................. TAAAATATTGGCGAAAACAGGTGACAGCAATAACCGC 246115 29 100.0 36 ............................. TAGTTATAAAACCAGTAGACTTCTACGGTAGCATTC 246180 29 100.0 36 ............................. TCCGCCAAGCAAACTATACAAGACTCATTTATCGAC 246245 29 100.0 37 ............................. AAACTAACTTAGTTTCAGAAACATCCCGCGAAAACTC 246311 29 100.0 35 ............................. AAAGCAGTCAAGAAGGCAGTAACGGGTAATGGTAA 246375 29 100.0 36 ............................. CATGTTACCCCACGTAAACCCTTGCAACCATGCCAT 246440 29 100.0 34 ............................. TTCCCCAAACATTTTATCATTATGACCTTATAGG 246503 29 100.0 34 ............................. ATGAAAAAAGGTTCGCTAGATATTTCTATGCTAT 246566 29 100.0 36 ............................. GTCTACAACATCACGTAATAGAAATTGAGTCTTAAC 246631 29 100.0 38 ............................. CCAGTTAAAGAAGAACCACAACCAGAGCAAGAAAAAGA 246698 29 100.0 35 ............................. CCGAAAAAGTCGGCAAAGTAAGATTGTTTTTTAAA 246762 29 100.0 37 ............................. TTGGAAGGTTGCTTTGGTGGTATTTGAAGAGTTTGAC 246828 29 100.0 34 ............................. TTCAAATTATATGTTACTTTTTACAAGAAATTCC 246891 29 100.0 38 ............................. GTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC 246958 29 100.0 35 ............................. CTAAAAAGGATTGGCAGAATGGAAATGTGTACGTA 247022 29 100.0 36 ............................. ACCATTACCACCAAAGTCCCTACACTCAATACTACC 247087 29 100.0 36 ............................. GAGAACGCCATACCAGTTGAACTAGATCATGTAGTA 247152 29 100.0 37 ............................. TTGAGACCATCTTGCGAAAAATGGATGCGGCAGGGTA 247218 29 100.0 35 ............................. TACTCCGTTAATGTTTTAGATGCTTTTTTAACAGC 247282 29 100.0 36 ............................. ATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTT 247347 29 100.0 35 ............................. TTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAG 247411 29 100.0 37 ............................. TTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTC 247477 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 247543 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 247607 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 247672 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 247737 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 247803 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 247868 29 100.0 35 ............................. TTTATCACTCCTATACTTTTCTTATTTCTGTAAAT 247932 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 247996 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 248061 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 248127 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 248192 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 248257 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 248321 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 248386 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 248451 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 248517 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 248582 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 248648 29 100.0 37 ............................. ATGAATGTATTAGCTACATGGACAACTATGCAACAGT 248714 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 248778 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 248843 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 248908 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 248974 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 249039 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 249103 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 249168 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 249235 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 249297 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 249360 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 249425 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 249491 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 249556 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 249622 29 93.1 0 .......................A....C | C [249645] ========== ====== ====== ====== ============================= ====================================== ================== 60 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCATAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //