Array 1 1771094-1775808 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJXO01000001.1 Neisseria brasiliensis strain N.95.16 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 1771094 33 100.0 33 ................................. GGGCTTCGTTGATGGCATCTTGACAGGCTGAAC 1771160 33 97.0 33 ................................T TATCGGCATCCCACTTTGCACCAAATTGCTTTG 1771226 33 100.0 34 ................................. CGCAAACAGGCAGAAGCACGCGCCCTGTTAAATG 1771293 33 100.0 39 ................................. AGCGCGGTTTTCACGCCGGTAGCGGTGAGCGCGCCGGAT 1771365 33 100.0 33 ................................. AGCCGTGCTGTTATTAAAGGTTGGAATGTATGA 1771431 33 100.0 35 ................................. TGCTTTCTTGCGCCCAAACGGAATACAGCATATGC 1771499 33 100.0 34 ................................. TGGCCTGTCGCTACGTCAACTGTATTGGCCGCGT 1771566 33 100.0 33 ................................. ATCGGTCAGCAATATTTGCACCGCGTTGAAGAG 1771632 33 100.0 35 ................................. CGCCCTTTGTGAAGTGGCTGGCCATGATAAGCCAA 1771700 33 100.0 33 ................................. TCTCCCCAAAATGCTGGCTCTGGTAAAACCAAC 1771766 33 97.0 33 ................................G CCAAACAAATGATACTGAACCAGTTTTAACAGC 1771832 33 100.0 34 ................................. TATTTCCGCCGAAAGCTGCATTAAAATCAGCCAA 1771899 33 100.0 33 ................................. TAAAGACCGCCTGTTTACGCTGATTAGTCGTCC 1771965 33 100.0 33 ................................. GCTTCAACCAATCCAGCAACCCGTTAGCTGCTT 1772031 33 100.0 35 ................................. ATTCAGCCAAGCTAACCGATTTAACGCTTGAACCC 1772099 33 100.0 34 ................................. CGATGAACAAAACCAATGCGGCCGCCTTCTACCT 1772166 33 100.0 34 ................................. TCTTAGAAGATTTGATTGCAAAACCCTTGTCAGC 1772233 33 97.0 34 ................................T GTTGACGGCTCGAAAAAACCGGCTGCAGCTATTG 1772300 33 97.0 34 ................................T CATTTGGTGGGTTGCAAAGGAGCAGGGGAGCCGC 1772367 33 100.0 34 ................................. TCTTCCGGCGGCAATTCTTCGCCGTCGTCTTGTC 1772434 33 100.0 33 ................................. TCCATGCCGTCTAAATCAAAATCGTCGTTTTCC 1772500 33 100.0 33 ................................. TCAAAATACGGCACGCCTTTTTCTGTGTCGTAG 1772566 33 100.0 34 ................................. ATTCCGAGACCTACGTGCAAAAGCAGGGACTGAC 1772633 33 100.0 33 ................................. GAACGGCAAACCAAGACCAACATCACGGCTTTG 1772699 33 93.9 33 ..............A.................G CTTTTTTGCCCGTCTGTCCGAGCCGTCAACCGT 1772765 33 100.0 34 ................................. ATTCCGAGACCTACGTGCAAAAGCAGGGACTGAC 1772832 33 97.0 32 ................................G ATTTGAGCGGCGCGAAGCACGTTATCGGGTGG 1772897 33 97.0 34 ................................C ATCAGTTCACCGCCATGCATTTGTTGTAACGGTC 1772964 33 97.0 33 ................................T TCTCATCTTGCCCTTTAATTTGAATCATGACCT 1773030 33 97.0 33 ................................T GCTGAAGAAGTTCGAGCGCGTTTGGCGTCTGAT 1773096 33 97.0 33 ................................G CCAGCCAGCATGGAAGCGTGTGGATTTGCTGAA 1773162 33 100.0 35 ................................. CCGGTTGATTCAGCCCATTTTTTAGCGGCCGTAGA 1773230 33 100.0 36 ................................. TTGATGATGTTCATCAGAATAAACGGCGCTTTCGGC 1773299 33 97.0 34 ................................T TCGTCCGTGCCGACTTCTTCAACAGCCTCTTCAT 1773366 33 100.0 37 ................................. TTCACACGGCTTACATAGTCAATTTTTGCTTCACCGG 1773436 33 97.0 34 ................................T ATAAGACGTGGCGTGCGCTTGAATATGGTGATGT 1773503 33 97.0 35 ................................G GGGACACCATCGAAGAGGCCATCACAAACGCACAG 1773571 33 97.0 32 ................................C ACTTCAATCAGGCGAACTTCCTGAAAATGCAC 1773636 33 100.0 33 ................................. TTTGTCAGCGGAATATATCGGGCATTGTCGGCA 1773702 33 100.0 32 ................................. CAATTGATGAGCGGAAGAGCCTCATTTGGCGA 1773767 33 97.0 38 ................................T TCGTTCCAAATCCACCCTTCGCCGCCAAGGCATCACGC 1773838 33 97.0 34 ................................T TCGTCGTAGGCTTCTTGGCGCTTATACCAGTCGT 1773905 33 100.0 33 ................................. TTGTCAATGTGTTTTTTAAAATGCGAGAAGATC 1773971 33 100.0 34 ................................. CTTTCGGGCATTAAGACGGATATGTCGTCTATTT 1774038 33 100.0 35 ................................. GCACCTGATGTTTGCTTGTATGTTGAAAGTCACAC 1774106 33 100.0 32 ................................. GCCGTGATGCAGAAATCCGTTATTTACCCGAT 1774171 33 100.0 34 ................................. GGAAGTTCGCCTGATTGAAGTGGAATACACTAAA 1774238 33 97.0 35 ................................C AATCCTTTGTCTTTGAAAGGGTTGTAAATAGAAAA 1774306 33 97.0 32 ................................C ATATAAACAGCGCAATATCGCAAAGCAATTTG 1774371 33 97.0 35 ................................G AACATGAGCTTGTCGGCATCGCTTAAGCCAATGGC 1774439 33 97.0 34 ................................G CTCCAGTCGGTATAACCTGTTGTCAGGTAAAGGA 1774506 33 100.0 33 ................................. ACGTGCCGTCAGTGTCATTTGCAAACACCTTTT 1774572 33 100.0 33 ................................. TTTGTCAGCGGAATATATCGGGCATTGTCGGCA 1774638 33 97.0 33 ................................C TCCGCCCACTCATCTTGCTTCTCTGCAATCGTG 1774704 33 100.0 34 ................................. AATCCTTTGGGCTTGTCCGGTGCACTCCCTGCAT 1774771 33 97.0 33 ................................T TGCCCAGCAGGGATATACCACGTTTTCTTATCG 1774837 33 100.0 34 ................................. CGCTGGAAATATCGCGGCTGCAAAATCCGCACAT 1774904 33 100.0 34 ................................. GATACAGGGTGTTTTTAATGCGCTCTACGCGGCC 1774971 33 100.0 34 ................................. GCTTCATAGCTTTCCTTTCATGAAATGGGTCTGC 1775038 33 97.0 33 ................................C TTGATGAATATTTGCCGTCGTCTCTTCCAGGTC 1775104 33 100.0 33 ................................. GCAACAATCAAAAAGGATTTCAACAACTCACAG 1775170 33 100.0 33 ................................. AAGTGCCTGACTTCGTGGCAGAATTAGAAACTC 1775236 33 100.0 36 ................................. AATTTGTATGTATCGCTTCCGTCCTGCTTGGTGCGC 1775305 33 100.0 38 ................................. CACTAGACGAATATCGTTCAGGCGGTTTTTTTGACCGT 1775376 33 97.0 36 ................................G GCTTGGTTGTGCTGGCCGGTTTGGTTGTGTTTTTTA 1775445 33 100.0 34 ................................. ATAAGTCTGCATAACTCTCAGGCGTGTTACTCAC 1775512 33 97.0 34 ................................C TGTATAGGTGTCGATTCTTCTGTTATTCGAGCTT 1775579 33 100.0 32 ................................. AAATGAAACTCGAAGACGGCACCGAAGTAGAC 1775644 33 100.0 33 ................................. ATGACTTTTTCATATAAACGCTTAGGCGTAACA 1775710 33 97.0 33 ................................T TGTTTGAAAACGCAGTGGGTTAATCATTAAAGG 1775776 33 78.8 0 T.............A.A.......A.....GTT | ========== ====== ====== ====== ================================= ======================================= ================== 71 33 98.6 34 CCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TCAATAGGGGAAAGATTAATGTTAATGCTGATTACTTACGATATTTCATTGGAAGATGCGCAAGGCCAAGCCAGATTGCGGCGAATCGCCAAACACTGCCAAGATTACGGCGTGCGCGTGCAATTTTCGGTATTCGAATGCGACATTACCCCCGATCAATGGGTCGTGCTCAAAGACAAACTGCTCAAAACCTACAACCCCGAAACAGACAGCTTACGCTTTTACCATTTGGGCAGCAAATGGCGCAGAAAAGTCGAACATCACGGCGCCAAACCGGCGGTGGATATTTTCCAAGATACATTGATTATCTGAATCGCTGACCACTGGTTCTCATGAAATCATCAGGAAGTTAGCGATTGAGAAATGTTCTTTAAAAATGAGGACTTATTTTTGATTAATGCCTTTTGCAGGAGTGTGCTATAATTTTTTCGGCTCTCTTGAATAACGCTAGCGAATCAGTGCATTATCTGCCTTGATTGGTAAGGATTGTACAAGGGGCT # Right flank : TATCCAGTAACGGCGAAAAACCAAGCAGAATAAGTCAAGCACTCCCGATACCCCTAGAGGAATTAAATCCCTATTAAAAAGCCTCGTATCATGAGGCCTTTTTATTATCGAGTTAATCTAAGTTTGAACTAAGTTAAAGTATGCTAAAAAAATCATGCCGTCTGAACGTGATTTTGGTATATGATTTAGGAATGAATGCCATTTGATTTCAGGAGAAAAATCCATGTTCCAATTTGCCCATCCCCAACAAACTCCGCTGCGCCAAGCGGTGACTGAGGCTTATCGCCGCGATGAAGTCGAAGCGGTGAACGATATGCTGCAACAGGCGCAGATGACGGGTGAAGAGCGTCGTGCTGCCGATGATTTGGCGCGCCGTTTGGTGACGCAGGTGCGGGCGAGCCGTACCAAAGCCAGCGGTGTGGATGCGTTGATGCACGAGTTTTCATTGTCGAGCGAAGAGGGTGTGGCGTTAATGTGTTTGGCGGAGGCTTTGTTGCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //