Array 1 1253-1021 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCP01000018.1 Prevotella copri strain iAP1411 NODE_43_length_9581_cov_40.0083_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1252 36 100.0 28 .................................... GACTTGGTATCGCAGGTTTGGCTACCAG 1188 36 100.0 30 .................................... CTCTGACGTATCTTATTCTTATACGCGTCA 1122 36 100.0 29 .................................... GATAATTTGCCATATTGATTTGATTTTGA 1057 36 86.1 0 ............G.C.........AC...A...... | T [1037] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 29 GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Left flank : GAAACTATCTGTGTGGAAAATCTTTCAATCAAGGATGGTATGTTGCAGGACAAGAAACATGGTAAGCATAATAAGCAAAAACGTTCTCGCAATAAGCTTATAGTTGATGCAGCTATGGGCATGTTGCGTATCAAGCTGCAGCAGAAATGTAAGTCGAAAGGAATCAACTTCATCAAAATTGAACGTTATTTTCCTTCTTCGAAGACTTGCCACTGTTGTGGAAAAATATTTAAAGGTTTACAGTTAAGTCAGCGTTCATGGGTGTGTCCTTCATGTCGTGCAAAGTTGGATAGGGATGTGAATGCTGCTATTAATATTAAAAATTTTGGAATTAGCAATAGTTCCCTAGGGAGGTGTACCCCCGAAGTAAAGTCTGTGGAGCATCGTAAGCAGAAACGAAGAAATGCCAAAAGCAGTGACGTTTCAGATGTAGAGAAGCAGAAATAAGAGAGCTCTAACATTGAGCAAATGCCTGTTATACAGAATAATATTTATCTGAG # Right flank : ATGCAGTCGCTATCCATTCGGCTGACGTCTGATGGCTTTACTTTCAGAATTTTTCATTAGGCAAAATGTATATTACGTATTTGTTCTTCTCTACATATCTTGTATATCCTCTAAGATTCAGAATATGCAGATGGAATTAGTAAAAAAATAATTGATAGTTAATTATGGATAAGACAATAAATACAACGCTCATCATAGGAAATGGGTTTGATTTAAGTATGGGTAAACATACCAGTTATAAGGAATTTTATGAGAAGCTGGTAAAGAATAAAGGTTTTTGGGATACCTCAAATCCGCAACCTATAGGGTTTCGTGGGAATTTACTTGTAAAACGACAAAAATTCTTTTATTGTACATATTCCTTGGGCATAACAGAAACGTCGTAAACACAAAATTCCCTTACCCCATAAAGCGACTTGAGGTAATACGCCGGTTTAACCAGAAAAGCATGGCCTTTAACCAAAGTCTGTCTTGAACAGGTTAGCATAAGCATTGTTGTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 59178-61773 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCP01000005.1 Prevotella copri strain iAP1411 NODE_13_length_76061_cov_31.7518_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59178 30 100.0 35 .............................. CCGTTTAATGAGCATGATACCCACGTTGTTTGTGT 59243 30 100.0 35 .............................. AGAAGTGACAAACTTTATAAAAAGTGAATATAAAA 59308 30 100.0 34 .............................. TTATAACTTTAATTACGTAGCCTAATGAAAAAAC 59372 30 100.0 36 .............................. TTGTTGATGATTTAGTTGCTGATTTCCGATATCTGT 59438 30 100.0 37 .............................. TTATAACGAAGAGATGGCAGATATGCATCTTTGTCTC 59505 30 100.0 35 .............................. GTAAGAAACTCAATTTCAATTGGAACGGCAAAACA 59570 30 100.0 38 .............................. TGAATGGCCGTCACCCCTTCTTGGAAATAGAACGAAAT 59638 30 100.0 39 .............................. CCCACCGCCCCCTTGAGTCTCTGATGTCCCTTTGCTAGA 59707 30 100.0 34 .............................. GTCTATCGTCGCCATTGAACGTGCAAAGGCAACT 59771 30 100.0 36 .............................. ATGCTTGAAGGTTACTAAGGCTCGGTTGCGCCCATG 59837 30 100.0 39 .............................. TAGGGTGGGACCCACGGCTGCTGCGCAGCCCCCACCCTA 59906 30 100.0 38 .............................. ATGTTGTTTCTACTCTCCGCGAATCTCTCTCTGCTACA 59974 30 100.0 34 .............................. GAGACAAAAGGTCAACATTTCCATTGTAAGAAGC 60038 30 100.0 39 .............................. GCTTTTTGTGCACCAGCTTGTACACTAGTTTTTACTTTA 60107 30 100.0 36 .............................. AGGCTCTGGAGGGCGAACTGGGCTGCAAGCTACTGA 60173 30 100.0 37 .............................. GATAGAGAAGCAGATAGAATACTATAAAGATGTGATA 60240 30 100.0 34 .............................. AGAGCTATTCCTGCGTGGATATGCAGTATAAGGA 60304 30 100.0 36 .............................. GAAAAAGGATTTTGAGTCAAAGTACAGCGAGGATGA 60370 30 100.0 34 .............................. GGCTTATTTGTCGCCTAGCGGAATTTAACCCCCT 60434 30 100.0 38 .............................. AAGAATGATGCAAGTAAAACTCAGGCAAAGCTGAGAGT 60502 30 100.0 37 .............................. TAGTAAAATATGGATATGAATATAAAGGCATATCCCG 60569 30 100.0 34 .............................. AGGCACGCCGCAAGCAGTATATCCTCGGCATCAT 60633 30 100.0 34 .............................. GTTATGATGAAGAGGATTTCGCTACTGATGGCGC 60697 30 100.0 34 .............................. AAAAGAACGCAGTTATAAATCTCGCTATTGAATA 60761 30 100.0 35 .............................. TTCAGTACCGCTACGCATGGCGGAACTACGCTCCG 60826 30 100.0 36 .............................. AAGTGTTCCTTGATTTTTTTCCAGAGTGCGCAGTTG 60892 30 100.0 37 .............................. GCGGTTATCTCTGCCTTGGCAGTAATGAGGAGTTGCA 60959 30 96.7 34 .............T................ TAGAATTATGGCAGTAAATCAAAAAGCAATCGGG 61023 30 100.0 35 .............................. GCGCATGCTCATGACCACCGTGGGCGCAGCATACA 61088 30 100.0 36 .............................. AGTGGAAGAACTATCTCACCAAGAAGGAGGCATCTG 61154 30 100.0 35 .............................. GAGAAGGGATTGATAAATTCACAGGAGAATGCTAT 61219 30 100.0 37 .............................. TTTCAGCCATCATTGATGAAGAGGTGAAAGCTGTAGA 61286 30 100.0 34 .............................. CAATTTTCAGCACCTCGTGTGACAATCACGAACC 61350 30 100.0 34 .............................. ATTTGGTCTAGCATATCATATACAATAGTAATAA 61414 30 96.7 34 ............................T. TTTTTTCTAGGTTTTAAAAAGAAAAAGGCTGGAA 61478 30 100.0 37 .............................. AGTACAACATCAAGGATGAGTGCATCAATCCGCACGT 61545 30 100.0 35 .............................. ATCATCTTTGCGCCTTCGATTGGTATCTCTTGATC 61610 30 100.0 36 .............................. GAAATATAGAGAGAAAAGCGGGCGTGCGTATATCGC 61676 30 100.0 39 .............................. ATAGACAATATGTATTGAGTTAATTCCGAACAAAGTTCT 61745 29 80.0 0 AA..T...C................-..T. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.3 36 GTTCAAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTTGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGTCTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTAATTTTCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCAGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCGCAAACCTATTGATTCTTCGAGCATCTATGTCTAAGGATTAACGG # Right flank : TCAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGACTCCTTCAGCTATCGCATTCGACTCCTTCAGCTAATGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCTGCCAACTCAGCCGTCTCCTTCACCTAATGCAGTCGACTCATTCAGCTAACTCAGTCGTCTCCTTCAGCCACCGCATTCGACTCCTCCAGCTATCGCATTCGTCTCCTCCGCTCACCGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCAGCCAACTCAGCCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //