Array 1 217131-217525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCH010000002.1 Escherichia coli strain M-9 NODE_2_length_375594_cov_66.4065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217131 29 100.0 32 ............................. GCGGTTTTTTTATAACATTTGATTCACTTCAG 217192 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 217253 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 217314 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 217375 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 217436 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 217497 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243073-244869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCH010000002.1 Escherichia coli strain M-9 NODE_2_length_375594_cov_66.4065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243073 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 243134 29 100.0 32 ............................. CACCAGATCTGACATGGTGCGGTGATCGCGCA 243195 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 243256 29 100.0 32 ............................. TGTTTCGGCTGATTTGTTCGCCGCGTCAGTGC 243317 29 100.0 32 ............................. ACAGTTCCCCGCATTAGCGTGGATAATCCGTT 243378 29 100.0 32 ............................. CCCCTGATTAAAACCAATAGTCTCGTAATATT 243439 29 100.0 32 ............................. GCCAGATGAGGGATTCGCAATGAGCAACATGA 243500 29 100.0 32 ............................. TAATATGCTCTATAAGTGCCTCTATCCGATCC 243561 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 243622 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 243683 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 243744 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 243805 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 243866 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 243927 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 243988 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 244049 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 244110 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 244171 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 244232 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 244293 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 244354 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 244415 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 244476 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 244537 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 244598 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 244659 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 244720 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 244780 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 244841 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //