Array 1 311979-313227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZVC010000003.1 Escherichia coli strain 27 Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311979 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 312040 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 312101 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 312162 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 312223 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 312284 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 312345 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 312406 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 312467 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 312528 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 312589 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 312650 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 312711 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 312772 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 312833 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 312894 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 312955 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 313016 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 313077 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 313138 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 313199 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 338927-340114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZVC010000003.1 Escherichia coli strain 27 Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 338927 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 338988 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 339049 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 339110 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 339171 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 339232 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 339293 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 339354 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 339415 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 339476 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 339537 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 339598 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 339659 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 339720 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 339781 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 339842 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 339903 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 339964 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 340025 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 340086 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //