Array 1 269815-262718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMNA01000026.1 Pseudorhodoferax sp. Leaf274 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================== ================== 269814 37 100.0 35 ..................................... CAAATCTCCTGCGCAGGATCTGCGCTTGCTCGTGG 269742 37 100.0 34 ..................................... CGCAAGCGGGGTCGGAGCTGCGCTGAGCATGGTC 269671 37 100.0 35 ..................................... CGCGACGTGGACGACTCCATCACCATCCTGATGGG 269599 37 100.0 35 ..................................... ATGATGTATTTGCTGACGTAGGCGGCCATCTTGGC 269527 37 100.0 34 ..................................... TTTGTGCTCTACGCGCTATCCCTCGTCAACCTGG 269456 37 100.0 35 ..................................... TGGAACTCGACGTAGAGCAGCTCGGCCTCGTGCGA 269384 37 100.0 35 ..................................... AAGGTGCCCCCGGTGCTGTGGGCCATGACCATCGG 269312 37 100.0 35 ..................................... CTGCGGTCGGTGGTCATCGTCGCACCGATCCGCGT 269240 37 100.0 35 ..................................... ATGCCGTCTTTGTAGTCGATCACCTCCAGCATCGC 269168 37 100.0 34 ..................................... CCAACGTTCCTGGTGCGCGGCCGACGCATCCATG 269097 37 100.0 34 ..................................... AACCGCAGCAACGGCACCTCGCAGCTGAACCCGA 269026 37 100.0 35 ..................................... AACCTCTTGGCGGGTGCTGTTGGCTCATCGATCAT 268954 37 100.0 35 ..................................... ATCAGAAGCTCCCCTTTCTTCGATCCTTCGTGCTT 268882 37 100.0 35 ..................................... ATGTCAATAACTGTACGGGGCGCGACCTGAGCCGG 268810 37 100.0 35 ..................................... GACAAGGCGAACGAGAGCCTGAAGAAGCTGTTCCA 268738 37 100.0 34 ..................................... TTCAACGCCCTGCAGGACTACCCGCTGCGCGAAG 268667 37 100.0 35 ..................................... ATAACGCTGCGCGTTACGAATTCTTCCCCCTTGAT 268595 37 100.0 34 ..................................... ACGTACTGCACGATGGGCGTTTCCTTGTAGCCCA 268524 37 100.0 34 ..................................... GCCGCATCGTGCAACGTCACCCTCGTCAACTGAT 268453 37 100.0 35 ..................................... GAGTCGACCTACCACAAGATGGACCGCGTGGGCGC 268381 37 100.0 35 ..................................... ATGACCGAGTGGTATCGCAAGTCGGCCGAAGGCTC 268309 37 100.0 34 ..................................... CTGGGGTTGGTGAAGTGGCTCATTTCGTGCCCCG 268238 37 100.0 34 ..................................... ATGGCCATCTCGGCCGCGGCGCGGTCCCATGCGT 268167 37 100.0 36 ..................................... GGCGACTACAGCCAGGTCGTGATTGGCGAGTGGGGC 268094 37 100.0 35 ..................................... GGCCGTGGTGAAGGGGAGATCGTTCATGCCCCACT 268022 37 100.0 35 ..................................... CGCACCGAGGGCGGCACGATCAACCGCGGGCGGCT 267950 37 100.0 34 ..................................... TGCAAATTGAACTGGTTGTTGACGCAGCGAAGAT 267879 37 100.0 34 ..................................... AAAGCAAATCCGGTAAGACCGGCCAGATAGGTAA 267808 37 100.0 34 ..................................... CTGCAGTAGGGTGGGCAGGCGGGAGAGGTTGTAG 267737 37 100.0 34 ..................................... TGAAACAGCTCGCGGCTCTGCGAGTATGTCTCGA 267666 37 100.0 35 ..................................... TTCCAGGGCAGCAACAGCACGACCCGGATCGAGAT 267594 37 100.0 36 ..................................... AAGTCCAGCACCGCCTTGGACTCAGCGAACTTGGCG 267521 37 100.0 35 ..................................... CGCGAATGGATGGGTGACGGCATCCAGTGGAATGG 267449 37 100.0 34 ..................................... ATGCATGTCGTGTACATCCCACACCGTTCGGGCA 267378 37 100.0 34 ..................................... TTGGAAGAGGCGCTTGAGCTGGTGCAGGCCTGCG 267307 37 100.0 34 ..................................... CTCAACCTGGCTGTTCGCCTGGCCGCCAACTTCG 267236 37 100.0 34 ..................................... TACCCCCTCCCTCGATCCATCGAAAGGAGCGACA 267165 37 100.0 34 ..................................... GTCGCGACCGGAAAGAGCATGCTGATGCAGTGCT 267094 37 100.0 35 ..................................... CTGCGGAGCTGCTGATACCTCCGACGGCGCCTGTG 267022 37 100.0 35 ..................................... ATCGCTGAAAAGCCATCCGTAGCCATGGCCATTGC 266950 37 100.0 34 ..................................... CAGCAGGATCGTTGTGGCGGCGCCTTGCAGGGCT 266879 37 97.3 35 ..................A.................. ATCTACAGAGCCGGCAGCAAGTACGACAGCCTGCC 266807 37 100.0 34 ..................................... CCGGCAAAGGTCTTGGCTCCTTTTCGCCTGCTCC 266736 37 100.0 35 ..................................... TTGCCGTGGAAGTCGATCACGACGGCGCACTCGCG 266664 37 100.0 35 ..................................... ACGTCCATGCTGCAGCAGGGCGAGAACAGCATCCT 266592 37 100.0 35 ..................................... CCACCGTGTTGTGGGTTCCTCGCATGCGGCGGGGA 266520 37 100.0 34 ..................................... ATGGTCTCGGCGCTGATGACGACCTGCACCGTGG 266449 37 100.0 34 ..................................... ACCGTGAGATCCACCACGTCGCTCTCGACCTCGC 266378 37 100.0 34 ..................................... ATGACGCCCGCTCAGCGGGCGGCTGTAAAGAGCG 266307 37 100.0 35 ..................................... AAGCATGGGTCGTCTCCCGGGCGGGGCGTTGGGCA 266235 37 97.3 34 ..........C.......................... AAGCACGATCCATCGTTGGTCGGCCTGGGCGATG 266164 37 100.0 35 ..................................... ACCAACGTGGTGGCGTCGGGCGTCGCGATCTGCGA 266092 37 100.0 35 ..................................... ATCGGCTCACTGATGATCCCGTATATGCCCGGCCG 266020 37 100.0 35 ..................................... CAGCCACGGCACCGGTCAGGTCAGCCGTCAGGGCA 265948 37 100.0 34 ..................................... AAACGTCCATGCCGGATCGCTGAACGGCCGGGGC 265877 37 100.0 35 ..................................... CCGCAACGGCGGTTTCTCCAGCGATGGCGAGGGCG 265805 37 100.0 35 ..................................... CAGTACAGGGTGTTGCCCGTGGCTTGGTCGATGAT 265733 37 100.0 35 ..................................... ACCGGGCCGTAGTCGGTCACATCGCCGGGCGTGGC 265661 37 100.0 35 ..................................... GTCATGCGGCATCCTTTCGATGGGGCTGCTCTGGG 265589 37 100.0 35 ..................................... ATCATGGCGCTGCGCCGCGGCACGATGCTCAGTCT 265517 37 100.0 34 ..................................... AAGCGTCAGCGCAGCCCCCGTCGAAAAGGCACTC 265446 37 100.0 34 ..................................... TCTCCTGCCCTCCTCTCCTCCCTCCTCTTCTCTC 265375 37 100.0 34 ..................................... ATTCGGCATGGGTCCGGCAGCACCTGCTGCACCT 265304 37 100.0 35 ..................................... GAGCGGGAGTTCGGCAAGAAGGCGCCCAAGATCAG 265232 37 100.0 34 ..................................... TCGGATGCGTAGGCGTTGAGCCAGAGCTGGTGCT 265161 37 100.0 35 ..................................... ATGTCGCGGAAACTCTGCTTCATCAGCAGCACGTC 265089 37 100.0 36 ..................................... AAGACGTGGTGCCAGCGCCAGGGGGCGAAGCAGCTG 265016 37 100.0 34 ..................................... AGCCGCGTGGACGTGGGGCGCGAGATCGAGAGCG 264945 37 100.0 34 ..................................... GGCCCGTTCGTGGCTGGTGCAACGGCGGTGGTCT 264874 37 100.0 34 ..................................... ATCGCCGGCATGGAGGCCGACTGCCTCGGCCGGC 264803 37 100.0 34 ..................................... TTGCTGATCCAGGGCTACAACAGCTGGGCTGCCG 264732 37 100.0 34 ..................................... CGGCCAGGTCCTGCGCTGGGCCGTGCTGACCACC 264661 37 100.0 35 ..................................... CTCGGCCTTGGCCGCTGCGGCGCGGCGGCGCTCGT 264589 37 100.0 34 ..................................... GGACGATGACGACGATGAGAACGGCTGATCCAAG 264518 37 100.0 34 ..................................... TACGCCTACGCGGAGAAGACCGACTACGGGACGT 264447 37 100.0 34 ..................................... TGCGCGTAGTGGCGTACGGCGTAGAGCTCCTACA 264376 37 100.0 34 ..................................... CAGCGCGTGCAGATCAACACGGCCGACCCGCACG 264305 37 100.0 36 ..................................... TCTTCGCCGGCCTGCTGGTTGCCCAACAGGTCGCCC 264232 37 100.0 34 ..................................... AGCTCGCGATTGCAGAGCTGGAACGTCCGGTTCG 264161 37 100.0 36 ..................................... GCCGCCTATACCGCGCACGCGCACCGCAACTTCAAC 264088 37 100.0 35 ..................................... AAAGGCCCTGACAGCGACTGCACCACGACGCTGCT 264016 37 100.0 34 ..................................... TGGTCCGGCACGCCGGCTTTTACAAAATCGCCTT 263945 37 97.3 34 ..................A.................. AATCCATTGATCAGAGGCGCTACATGGTTGGCAC 263874 37 97.3 35 .........A........................... ATGGGCTCGCACCTGTTCACGCACACCCGGGGCCG 263802 37 100.0 34 ..................................... TCGACATAGCCGGAGTACTCCAGCTTGGCGTACT 263731 37 94.6 34 ....A...............T................ CGCTGCAGCGTTCGATGCAACCGGTGTCTACAGC 263660 37 97.3 34 ............G........................ CTCCACGGTCAGCGCATCATCGTCACCTACGCAT 263589 37 97.3 35 ............G........................ TTGCAGGTGTAGCAAGGCCCGGGCTTGAGGTCGAG 263517 37 100.0 34 ..................................... AGGATGGCAGGGTCAACGCTCTGCGCGGTCAAGC 263446 36 94.6 35 ..............-......C............... AACGGCCTGGTGCGCCTGGCGTACGACACGTACGA 263375 37 100.0 35 ..................................... CAATGTCTCGATCAGGCCGGGCACACCGGCCGGCA 263303 37 83.8 35 A.........CG..............G.A......C. CGATCGCCCCCCCGCCAGGAATGTCACGGCGAAAA 263231 37 97.3 36 ...................A................. TCCTCGGCGCTGTGCAGGCCCCAGCGCATCAGGGTG T [263227] 263157 37 91.9 35 .......A............T....A........... TTGCACGTGAACTCGCCATCGACCATGGCGATGAC 263085 37 97.3 34 ....................................A AGTTTCGACCCTGTGTTTTTTGCGTGGCCGGCTT 263014 37 89.2 79 ....T..............A.A..............A ATCGAGGGCGACCTGAGCGGCCTGGGGAAGGCGTGGATTGAAACGAGTTCGTTATCAATCTGTAGACCGGCGACATCAC 262898 37 83.8 34 .A...........C....T.......A.......CT. TGGCGTGAGTCCGGCAGCCAGTGCCGCGTGCAAC 262827 36 73.0 36 ....T....T..T..C...TG...AAA.....-.... GTCTCCCAGTTCCTTGCTAATGGCCCCGCCTACGGC 262755 37 73.0 0 ...CT..TT.G.......AA.TC....A......... | G [262722] ========== ====== ====== ====== ===================================== =============================================================================== ================== 99 37 98.6 35 GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC # Left flank : TGGATGCTGATCATCGTGTGCTATGACGTGAGCACAGAGACCAGAGCCGGCCGGCGCCGACTGCGCCGAGTGGCCAAGGTGTGCGAAAGCACTGGCCAGCGGGTGCAGCAGTCGGTGTTTGAATGCCAGGTCACCCTGGCCGAATTTGAGCAACTCGAGCGGCGCCTGCTGGCCGAAGTGGATCTTGCGCAGGATTGCCTGCGCCTGTATCGGCTGCCAGAGACCCGAGGCACCGAGGTGCGGGAGCACGGCAAATTCAAAGCCGTTGACTTCGACGGCCCGTTGGTGCTCTGACGGCAGCTGCCTGCCGGCTAAGATCAGAACGCGAACCCAAAGTGCTGGACTTCGGCCAGTGAGGTTCGCGCGCTTCGTAAGCTGTTGTTTTCCATGAACATCTTAAGTCGCACGGGCCGTACGAGTCCGTGTCTGGCACGTTGCTTCGAAACTTTCGCGCAAAGCCGGCGGATTTCTCCTGCCCGAGAACAACTTGTGCGCGAAGC # Right flank : GCCCAAGGCACGGTCGCCTTTGGGTCCAACGCTTCGCGTCGCCGGTCAGCAGTGACGCGAGACCTCACGCTGTCAAGACGGCGTCCTACATGTTGTAACTAGATGGGCGCGCCGCCTCTGCTGCATTTCGAATCATCCGACAGGACTTGCGCAGCCATCGATGCAATGTCTTCGTCCAGACGGCGGCCAGGCGCGCAGCCACAATCCCCCATCGACTTCTCGAACACCCGCATGATCGCCATCACCCCCACCATCTCCGCCGGCAACACCCACCCCTTCGTCCTGTTCGGCGGCATCAACGTGCTCGAATCCCGCGACTTGGCGTTGCGGGCCTGCGAGGAGTACGTGCGCGTCACGGCCAAGCTGGGCATTCCGTATGTGTTCAAGGCCAGTTTCGACAAGGCCAACCGCTCGTCCATCCACTCCTACCGCGGCCCGGGGCTGGAGGAGGGGCTGAAGATCTTCGAGGCGGTCAAGGCGCAGTTCGGCGTGCCCGTCAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-15.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [49-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //