Array 1 187255-185825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTET010000003.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 187254 28 100.0 36 ............................ TTGATGACGCTTGGTCTTCTGTCCAAAATAAAACCA 187190 28 100.0 37 ............................ CTATAAAGGGGGAAACTAAATGAAAAATATAACACGA 187125 28 100.0 36 ............................ AAATAGGTTGGTCGATAAATGAATCAACTGTAAGCA 187061 28 100.0 36 ............................ GTGGAAAGAAGTATACTGAATTGCTTCATAAATCAT 186997 28 100.0 35 ............................ TTCAACGATAATATTTTTTTAGCTAATTCAGTTTC 186934 28 100.0 36 ............................ TTATTTCCATACACTTGATATGCTGTAGGTTCATCA 186870 28 100.0 35 ............................ TCGATTTGCATTTGACTATCTGATGTTGCAAATGT 186807 28 100.0 36 ............................ AATGATAACATTAATATGAATTTTATTAATGAAGAA 186743 28 100.0 36 ............................ GAGATAAGAGATTCTGCTTTATTCAATGGATTAAAC 186679 28 100.0 36 ............................ ACTAATTCATCAAGGCTAATATTATACACTTCACAA 186615 28 100.0 35 ............................ TAGCTCTATAGCGTTTTGCATATCATTACTAATTG 186552 28 100.0 36 ............................ AGAACTTGTCCTGGAACATTTGTTGCTTGCAAGTCT 186488 28 100.0 36 ............................ TGCAATAACATTAACTTGATTCCATTTATCCCCCCA 186424 28 100.0 35 ............................ AAGCTTCTATATATTCATCATTTTCACTCTGAAGC 186361 28 100.0 35 ............................ CAATATACACCTTGAGCATTAACACTTCCCGACAA 186298 28 100.0 35 ............................ CATTAAATAAAGCATCATACTTAGCTTTAACTTCA 186235 28 100.0 36 ............................ GTACGTTTTTCCAATGTTGTTGTAAGATTTAATATT 186171 28 96.4 36 .......A.................... GGAGAAGTTATGGATGTAATTGAAAGAGGAAGCACA 186107 28 96.4 36 .......A.................... AATAAAAGAAAAGCTCCAATTGGTAATTCGTTAAAA 186043 28 96.4 36 .......A.................... ACTATTACATCTAGTGCAACAAATATTCTGGCTTCA 185979 28 96.4 36 .......A.................... TTAAAGAAAAGTAAAATATGTAAAGATTATCTTTAT 185915 28 96.4 35 .......A.................... ACTAAAAAGGTTAAAAGTGTTAAAGAGCCTATACG 185852 28 67.9 0 .......A......TATT...A.CG..G | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 97.8 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TAAACATTTGATAAAAGATGAAAAATATAAACCGTTGAAAGCTTGGTGGTAATATGTTTGTAATAGTAACTTACGATGTTAATGAAAAAAGAGTAAACAGAGTTAGGAAAGTATTAAAAAAGTATATAACATGGTGTCAAAATTCAGTTTTTGAAGGAGAAATAACTGAAGGAAAATTAACAAAATGTATGGCAGAAGTTAAAAAATATCTAATAGATTCAGAAGATTCACTATATATTTATAGGATTCCTTATAGTAAAAATATAAAGAAAGATGTTATAGGCGTTGAAAAGAATTTAGATGAATTATTTTTATAATTGCATTAAGCGATTTTTAGTATTAAATCTATCTCAAGGCAGTTGTTAACAACGGTGTAATCAATTTTATTTAATTATTAAAAATCACTACTATAGCTTTACTGCAAAAGTTTATGCTATAATATAAAAAGATATAAGCTAAGATGGCTAATATAAAGGGTTTAAGTTATGTGTTTTTTCGGG # Right flank : CTATTTTTTCCTTCCTTAATAAGGTTCTCCATTGTGCATCTATTACAATAAAACGTTATTACAGATTCTAGACGGATGATCATATTTGTTACAACAAAAGTATAATTTATACACATTTGACCTTCTTTGTTTTCTAATTTCACAACAACTCTGCGATTTTTAGTTAATTTCTTTGCGTTATACATGAATTTGCAATATATGATATTATGTTAATACATGTTCCTTTTTTATAATTATTCCATAATTAATAAATTATTGATAATATTTATACAATATTGCATTTGCTTTTAGTCTTATGGTATATTTAGCAGCATGTTCTTCAGAAGCCTTGTAAAATTCTGGTAGAGAAAAACCGCTATTCCCATGAATGTATAGTCTATATAACTATATTTATTTGAGTATATTTTTAGTAATGGATCAATAAAAGCCACTGTTGTTCTTAATTTATAAACATTCCCAGATCTTAATTATGCTTTTAACAAATCACCTGCTAATCCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 17178-17665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTET010000025.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_25, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 17178 30 100.0 36 .............................. AGGAAAAACAAATACACTTGTATATGCTTATAATTT 17244 30 100.0 36 .............................. CAACTAGTAGTATATCTAATTCTAATAATTATTTAA 17310 30 100.0 36 .............................. GAATTCAATGTAAGTATTGATGGCAGTTTCACTAGT 17376 30 100.0 36 .............................. ATTTGAAGTGAATGAACTTATGTGTATAAAATTTCT 17442 30 100.0 35 .............................. AGCGTTAAATCTAAAAATAAAAAAGAAAAAGTTTC 17507 30 100.0 34 .............................. TAAATTCGAATGAGTACGAAATGGATGGAAAACA 17571 30 100.0 35 .............................. GAGTTTTAGTTAATACTAAGGCTTTTTTTATTGCC 17636 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 ATTTCAAAACATATAATGTTAATCTTCAAC # Left flank : ATAGGAAAACAAATAACACCTTAGCTTCATCATTATTAACAGCAAATACTTCATTATAATAATGATTAAAGAAAACTATACCTGATGCACGGGAATGATTAGAATTATTTACTTTTATATTTTTATACTTTTCATTTTTCATTTTTTCTTTTTGAAAACCAGGATTACTCTTACCTACATCGTGGAAAAATACAGTATTTAATACAATTTCCTTCCACAAATTAATGCATTTACTTGAGCAGCCTTTTAATAGTCTTTGTTCAAAATTATTAAATACACTATCTAGATTTTTTACATCTACTATCTTATAAAAATATTTTATGCACCGCTCATTATGCTCAGCTAGAGTTTCATATTCTAAAATGTCACTCTTAGTATGAGAATATATATCAGATGGCTCTTTTAATAACGTAGATATATCTATAATTTTTATATTTTCAAAATACATAAATTCTCTTCTTCCTTTTTTATTTTTATTAAATTAGTTGGACTGTATCTAT # Right flank : CCAAAGTAAATAAGTCATTTCTATATATATTAATATCTTTTAATCCAGCCATTCACCTACATTTGCATATTATTTTACCAGCTATTTTATAAAATTAAATACAATAATACTTAAAATAGTAAAAGCTCATAAAATAGATATTTCGCTACAAATTACTTATTAAAATCGCCTGGTAAATTATTTGTATACTTGTTACTTTTTAATAGAAAAATAGATTTTTATCATTAATACTATAGATAATAGATTCTTTATCATTAACCTCTATAGACTTATTAGTACAAATAAATTTTCTAGTATCATATGTATTAAACTTAGGTTCCAAAGCATATGGTAAAAACTCTTGGTATACATATTCTCGCATTTTTTCTAAACCACAGCTTGGTGCTGCTTTAACAGGTCTAAATCCATTAGGTTTGATTAATTTTTTTATATTAACACAATCTTTTAAGAACAAGCTATCCAAAGTAGATATATAGGAAACATCTTGTGTTTCAACACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACATATAATGTTAATCTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 41749-41572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTET010000029.1 Clostridium saccharobutylicum strain DJ070 Ga0419082_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================== ================== 41748 39 100.0 30 ....................................... AGGATTGGACATTTAGCGATTGTTATAAAT 41679 39 97.4 30 ..G.................................... GAGAATATGCATTTGTTAAGTGCGTTAATT 41610 39 94.9 0 .......C.........................G..... | ========== ====== ====== ====== ======================================= ============================== ================== 3 39 97.4 30 TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Left flank : GAATAATATATTCTGAAAGTTATGTTACAGTGCTATTGGGTAAAAACGAGAATAAGGGGAATGAATGATGATAAAATTGAAATTAACAAAAGTAATGGCAAGTTCATTAATACTAGCTTCAGTATTTGCATTAAATCCAATAGGAGCAAGTGCAGAATGGAAAAAAGATAGTAAGGGGTGGTGGTATACAGAAGGTGATTCGTGGGCTACAGGTTTGAGAGAGATTAACGGAAAGCAGTACTATTTTGACAAAACAGGATACATGGTCGAGGATAAAATTGTTGATAACTTGTATTTTGACAGTAATGGAGCAAGGACAGAATATATATGTGCTGACGGATTTGCAGTTGATAAATTAACTGGTACAATAATAAAATTTAGTAGACAAGATGCTCGGGTGAGGCCAGGCGAACCAGGTATTTCAGTAGTTATACCAAGAGAAATTGGTGGTGTTGAGATAAAAGGTATAGGAGGTAAGGCTTTTAAGATTTGTACTAACA # Right flank : GAGATTATGCATTTTCGGACTGCAATAATGCTATTTTTTATGTTGGAAATGAGAAAACAAAACAACTTATTCTTAATTCAAATTCAAAGATAGATAGTAATAAAATAATAATAAAATCACAAATAATATAATAATTAAAGGTAAGCGTCAAAAATTTAGTAAATAGAATACAAGCACTTCCTTTGATAAAATATCGAAATATTCTATTTAAAAGGAAATTTTAGGAGATCCGTTTGTAGAGAGGGACATTTAGATTAAATGAAAATAGTAAATACATAATGTTCTTAAAAGGTGTGACAATTGGAGTTTGTACGTGTTGCACAAATAGAAAATTGAATCACTTTAAAATATAGGTAGGCTTTGTCAAAGTCTATCTTATTTTTTGTAAAAATATAGATAGAAAATAAAAATTATATGAGAGGAAATATTTTTATTTACGTTATATAATGTGTAAGAGCTTTTACGAAACTAATTGATTGGAGAAATTTTAATGAGGTGTA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //