Array 1 99984-102148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOL01000005.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45787 45787_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99984 29 100.0 32 ............................. CCGGGACCTGCGGATAAAGGGTGTAACCTCAC 100045 29 100.0 32 ............................. CACCGGCCCCTTACCGCGGAAAGCGTCGGTAT 100106 29 100.0 32 ............................. AAAACCAACCCCGTGCCCACAAGCACGGGGTG 100167 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 100228 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 100289 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 100350 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 100411 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 100472 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 100533 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 100594 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 100655 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 100716 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 100777 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 100838 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 100899 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 100960 29 100.0 30 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCG 101019 29 93.1 32 .....T......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT G [101021] 101081 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 101142 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 101203 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 101264 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 101326 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 101387 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 101448 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 101509 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 101570 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 101631 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 101693 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 101754 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 101815 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 101876 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 101937 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 101998 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 102059 29 100.0 32 ............................. GTCTCTCGCCACGGCGCTAAAGACGTGGGCCG 102120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CATCCTTCGCCCTTGGCTTCGTGCGCGCGGGTGTTTTCCCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //