Array 1 9273-7415 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWS02000085.1 Salmonella enterica subsp. enterica serovar Hadar strain HIY0113 NODE_85_length_14560_cov_13.612762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9272 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 9211 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 9150 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 9089 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 9028 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 8967 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 8906 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 8845 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 8784 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 8723 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 8662 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8601 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8540 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 8479 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 8418 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 8357 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 8296 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 8235 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8174 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8113 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8052 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7991 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7930 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7869 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7808 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7747 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7686 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7625 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7564 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7503 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7442 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69263-67523 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWS02000022.1 Salmonella enterica subsp. enterica serovar Hadar strain HIY0113 NODE_22_length_75393_cov_13.329246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69262 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 69201 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 69140 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 69079 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 69018 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 68957 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 68896 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 68835 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 68774 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 68713 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 68652 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 68591 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 68530 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 68469 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 68408 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 68347 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 68286 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 68225 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 68163 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 68101 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 68040 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 67979 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 67918 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 67857 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 67796 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 67735 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 67674 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 67613 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 67552 29 100.0 0 ............................. | A [67525] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //