Array 1 86271-82833 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNGX01000005.1 Bifidobacterium longum subsp. longum strain MCC00198 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 86270 36 100.0 28 .................................... GCCCCGAACAGGTGAAGGCCCTCGCACT 86206 36 100.0 28 .................................... TCAGATCAGGCCATCGGAGGGTGTTTGG 86142 36 100.0 28 .................................... TAGGAGGTTTGTTATGAGCATTAATACT 86078 36 100.0 28 .................................... CACCTGATAATGCGGAGTCCCGTGAGCT 86014 36 100.0 28 .................................... TGCTACTGGAAGGACAACGACGTGACCA 85950 36 100.0 28 .................................... CCAGGACGCGAGGACCGCTAGCGAACGG 85886 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 85822 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 85758 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 85694 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 85630 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 85566 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 85502 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 85438 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 85374 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 85310 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 85246 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 85182 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 85118 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 85053 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 84989 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 84925 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 84861 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 84797 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 84732 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 84668 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 84604 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 84540 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 84475 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 84410 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 84345 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 84281 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 84217 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 84153 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 84089 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 84025 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 83961 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 83897 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 83832 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 83768 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 83704 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 83640 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 83575 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 83510 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 83446 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 83381 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 83317 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 83253 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 83188 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 83124 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 83060 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 82996 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 82932 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 82868 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 54 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 95377-95721 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNGX01000006.1 Bifidobacterium longum subsp. longum strain MCC00198 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 95377 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 95443 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [95449] 95527 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 95587 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [95635] 95635 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 95692 27 81.5 0 C.............C.....C....CG | GC,C [95709,95713] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //