Array 1 942374-943378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060517.1 Salmonella enterica strain SLR1_7627 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942374 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 942435 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 942496 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 942557 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 942618 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 942679 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 942740 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 942802 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 942863 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 942924 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 942985 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 943046 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 943107 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 943168 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943229 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943290 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 943351 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 959943-961314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060517.1 Salmonella enterica strain SLR1_7627 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959943 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 960004 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 960065 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 960126 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 960187 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 960248 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 960309 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 960370 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 960431 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 960492 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 960553 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 960614 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 960675 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 960736 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 960797 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 960858 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 960919 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 960980 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 961041 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 961102 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 961163 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 961224 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 961285 29 100.0 0 ............................. | A [961312] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //