Array 1 50-2537 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKSU01000007.1 Bifidobacterium longum subsp. longum strain 7 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 50 33 100.0 34 ................................. AGACACCCACGGGAATCGTGAAGTCCCAAGCACC 117 33 93.9 33 ........................G.......G CCATTTTCGGCACGCCGGACACGTGGAATCAGC 183 33 97.0 32 ................................C CATCGCGCCGGACGGGTGGAAACACAAGGCGG 248 33 97.0 34 ................................T GAAGTAGCTTGAGCGTTTGAGCCCTGACCTCCTG 315 33 97.0 34 ................................T CATACATCTCTGTAATCTGATCGACCATAGGTTT 382 33 97.0 34 ................................G GTGTCGGTTACGCCTAATGCTGTGAGATTTTTGG 449 33 97.0 33 ................................T TGATCGCCGGCACCCAGATGGTGGTGATGTTGC 515 33 100.0 35 ................................. TCCCCGTGGACAACCGCGAGGTGGCAGCCGACGAC 583 33 100.0 32 ................................. GGCTATTAGGGCTCGTTCCCAGAGGCGTTGCG 648 33 100.0 34 ................................. TCATACCACACTCGGTTACAAAAAGTAACCGGCG 715 33 97.0 34 ................................G ATTACAATGTTTGGACGCCAAACACGGTAATTAA 782 33 97.0 32 ................................T GGACGGGCGCGGGGTCTACCGCCAAGGTGGTG 847 33 93.9 34 .........T......................C CCTTGGACGGTCAGGTAAACGGCAAGACCGGTCA 914 33 100.0 33 ................................. ACACGTTGGCCTTCATTGAATCGGTGAAGCCCG 980 33 97.0 33 ................................G TATACCGTATGTCTTACCTAAACCACGCGCGCC 1046 33 100.0 34 ................................. TGGTCGGGATGATGGCGTCCATGATGGTGTCGCC 1113 33 100.0 32 ................................. TCTCTGTAACAAAAATAGAGCGTGTCGCTTGT 1178 33 97.0 34 ................................T CATTTGGCGGACGCGACGGCGCGAACCAGAAGAT 1245 33 97.0 33 ................................G GGCTCGTTCCCTTGCGGCTCCTGTGCCTCGTTT 1311 33 97.0 33 ................................T TCTCGTGGGAGTCCGCCGATCGGGCGTCGCGGG 1377 33 97.0 34 ................................T CGAAAACGCGCCCCACGGCGGACGTGGTGGGGAA 1444 33 97.0 33 ................................T GCGGACAATCGACCCGCCTGCAGGACGGTTTCG 1510 33 97.0 32 ................................T TCCGTTCGCTCGGCCGAATCCTCCTGGGCATG 1575 33 100.0 32 ................................. CCACCTGCTGTACCGTGCCACTGTTCGGGTCA 1640 33 97.0 36 ................................G CCTATCATAGTGTCGCTGATTAACTGGTTATCTGTA 1709 33 100.0 33 ................................. ACCGCGTCCGACCGGAACGTGGCCGTGCCGTCG 1775 33 97.0 32 ................................C GTATCGAACCCGCCAACGGCGTGAATAATCTC 1840 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 1906 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 1972 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 2041 33 97.0 34 ................................G CCCTAAGCATGGCAAGGCTGATAGTCGCGTGTTG 2108 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 2175 33 100.0 33 ................................. ACGATCCTTTAAGGAGGAAACCATGACCGCGCT 2241 33 100.0 33 ................................. AGCCGCAAGACATCAGCCTAGACGATTATCTAG 2307 33 100.0 33 ................................. ACTTGCATCATAGGCGTATGCGCTCACACTCGT 2373 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 2439 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 2505 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GCGTGGATTGAAATACGCCAGCAGTCCCGGCATCGCCACGCGGGATCGTG # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 154455-162498 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKSU01000034.1 Bifidobacterium longum subsp. longum strain 7 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 154455 33 100.0 33 ................................. TCGGCCTCCGATTGGGACAGGCGCCACTGCTCG 154521 33 97.0 33 ................................G AGTTCGTCGCCGCCGTTCTTGGGCGAGCGGATA 154587 33 97.0 33 ................................C GTGACGGTGATGATGTCCTGCAGTCCGATACGG 154653 33 97.0 34 ................................T GCCTGTCCGGCTGGCCGTCATATCGCGCGATGGC 154720 33 97.0 33 ................................G TGGCTCCGACCGGAGTGGCCTGGACCCCGCCGG 154786 33 100.0 32 ................................. TCGGCTTCAACGCCGCCGCCAATGCGGCGAAC 154851 33 97.0 32 ................................C TTATTCGTAGGTTGGGATTCCGATGGCGGTCG 154916 33 97.0 33 ................................T GACTGGTGTTGTCCTGCCTCCACACCACGTCTA 154982 33 97.0 36 ................................G TAATCTATGGTGATCCAGGAACTGGTAAATCGACGA 155051 33 97.0 33 ................................C CGTATAAGCCGTATGAAGTGCCGTCGCCATCTT 155117 33 97.0 33 ................................T TCGACACCTTGCCGATGTAGGTCGCGGCCGCAT 155183 33 97.0 33 ................................C TTTCAATGTGATTGGTGATGTTGGTGCCGGCGT 155249 33 100.0 34 ................................. CCCAGTCATCTATCATGAGTTTTTTGCCGCCGTA 155316 33 100.0 32 ................................. ACGCAAGCTCACGTAGCAGATGATAGTACATG 155381 33 97.0 34 ................................T GCGTCGGAGCGGTGGAACACGGTAGCGAGACCCT 155448 33 100.0 32 ................................. CGTCACCGCCAAGGGTAAGCGCCGAAGCCAAC 155513 33 97.0 34 ................................C AGCACGACGTCACATTCGGTAGCTGCTATGTGAC 155580 33 100.0 33 ................................. TGCCGCCCAGTATGCGAGAGCGGCGCGCCACGG 155646 33 100.0 33 ................................. AGCGCCGTGACCTCTCCTCCGAGATAGCGCATG 155712 33 100.0 33 ................................. CTACCGGTGTCCAGCCCCTCGGGCAGTGCGAGA 155778 33 97.0 34 ................................C GTCTCGCTTTCCTGACGGCGCGACAGGAGGGCGC 155845 33 97.0 34 ................................C ATGCGCCCAGCTTACTTTGGCTAGCCTCGATGCC 155912 33 100.0 34 ................................. TTACTGCCGACCAGCGTACCAAGCTCACCGTAGA 155979 33 97.0 33 ................................C ACGGGGCGCATACCCGATATCAACGACAGGAAT 156045 33 100.0 34 ................................. AGGCGGTTGGAAGTTCCGCAAAAGCCAAGGGAAT 156112 33 100.0 35 ................................. ATCTCTCGCAGTTCGGGGATAATGATAAGCCCTCA 156180 33 97.0 37 ................................T CCCTCGTGCTGCAACCTGACGTGAACAGATCGCGCCG 156250 33 97.0 32 ................................T AGCATGTCGTCAAAAGTCCATTGATAGCCGTT 156315 33 97.0 34 ................................T TCCGTGATCCGTTCAGGTTGGTTCCGGTCACCGA 156382 33 97.0 34 ................................C CCAACCACCCGCACGGGTGGTTTTTTATGCCCGA 156449 33 97.0 33 ................................G GCTGCGATGTGTCTGGCCTTGCATTTGCGGCGG 156515 33 100.0 33 ................................. ACGAGACCGGCGGAGACCCCGCACAGGCCATCG 156581 33 97.0 33 ................................C GCTTCCGGGAAGGTCCGCGTCTGGGCCGAACCG 156647 33 97.0 32 ................................C CCTCCCCCGCCGAGATGACGCGGTGGCGTGAG 156712 33 97.0 33 ................................T CCTGTGGAGTCGTATCCGCAGTGTCCTGTTGAA 156778 33 97.0 33 ................................T CGGCATCCCGGCGTCAATCATGCTTGCCGCAGT 156844 33 97.0 34 ................................G TGTGTGTTCGACGGCGTGGACACGGCCAAGCTCT 156911 33 100.0 35 ................................. TCTTGGCGGCGTTGATGGCGTCAAGGTCTTTGAAT 156979 33 97.0 33 ................................T CGTTGGCCTGCGCCACCTCGTCGGAGATGAGCC 157045 33 97.0 34 ................................T CGTATCATCATACGCGCGTGGCTTATGCCACGCT 157112 33 97.0 33 ................................G ACCTTGAACTGGTGTCGGAAAAAGACCGTGGGT 157178 33 100.0 33 ................................. ATCCGTCCATTGTCGCGTCGATTGCCGTCAACG 157244 33 97.0 32 ................................G CTGAGGATTACGAGAGCTACCCACAGACGTAT 157309 33 100.0 32 ................................. GACCGTGGAAGCCGCATGGGGCACCAAGCCGA 157374 33 100.0 33 ................................. TATGTTGTGGTGTTAAAAATGGTGTTTGTTCAT 157440 33 97.0 33 ................................G GGATGAGGGTGATGGTTGCATCGGTGATTCCTC 157506 33 100.0 34 ................................. TTGTTGCGCTCAATTGAGCGCACGTCAAGCGGGC 157573 33 100.0 35 ................................. CTCAGGTCAGCAACACATCCGTCAACGAGACAATC 157641 33 100.0 34 ................................. CCAGGGAGCCAGAAGACAAAGCTGATCGCCGTCA 157708 33 97.0 33 ................................C AGTAACGACTGTCGTGAGTTCCGGGTGGCGCGC 157774 33 100.0 34 ................................. CGCAGATGACCATGCAGCCGCACACCGACATGCT 157841 33 100.0 34 ................................. CCACGGCGTGGAACGCCTACCCAAGCCACACCGG 157908 33 97.0 34 ................................G TTGACATAATAATTATAGCTCAATTAAGTAAGTT 157975 33 97.0 32 ................................T CCACGCACCTCGCCGAAGCCGGAGCCCCGGAA 158040 33 97.0 32 ................................C CAGATGCTTTGGGCCTCCTTGAGAGACGCGAT 158105 33 97.0 32 ................................C GTCCGCCAAGCCGACGGGGAACCAGAAGCTGG 158170 33 97.0 35 ................................C GCGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 158238 33 97.0 34 ................................C AACCGGCAGTAGGCTGTTGCCGCATCGTGGTATA 158305 33 100.0 33 ................................. CGCCGGACACGAGGCAGTTGTTGTTGACCTGTC 158371 33 97.0 34 ................................C TCCACCCAACACACGTCCACGCCCTCGATACTCT 158438 33 97.0 33 ................................T CGCGTGAGCTGCGCGAAGAAGACCGGCTTATGA 158504 33 100.0 32 ................................. CGTGAAACAGACCGCGACGGGGGAGCGCAAAC 158569 33 100.0 34 ................................. TCCAACAGAAAACGCAGGTGACTAATGAGGTGTT 158636 33 100.0 34 ................................. CGTTTTGGCAGATGCAGGAAGCGTATGTGAGGGG 158703 33 97.0 34 ................................T TATACCTGATTGCTGTAGTAAGCCGCCAAGAATC 158770 33 100.0 33 ................................. GCCCGTTCGGCGCGAGGTCGGGGCATGTGGTGT 158836 33 100.0 33 ................................. TGGCGGAGTGCGAACGGTTGAGCGGCGGTGTGC 158902 33 100.0 32 ................................. ACGCCGACCAGCAGACCATCTCCGACGTGATG 158967 33 97.0 32 ................................C AGATCACCCCCGGCAACCCGAACAAGGCCGGT 159032 33 100.0 34 ................................. CCCTGTCCGCTTGCGGTAGTGATACCGCGAAGTC 159099 33 97.0 35 ................................G ACTCGCTTGGAGCCTCCAGTAAGCGACGTGGGTTA 159167 33 97.0 31 ................................C CAATTGGGAATACCTATGATGGAGCCAACAA 159231 33 100.0 32 ................................. GATGAACCAGCCCGGTGTGATAACCGGGCTGG 159296 33 97.0 32 ................................G CGATCCAGTGGCAGTGTTTACTGGATGTCACG 159361 33 97.0 34 ................................G ATAAGCCCGATAAGTTCTTCGCGTAGGGCGGCCA 159428 33 97.0 35 ................................C ACCTTCGCGAGCATCAACGACGCCGGGATGCCCAA 159496 33 100.0 33 ................................. GTTATCCAGAACGGCGCGCCCTACTCAGGCGGC 159562 33 97.0 33 ................................G ACCAGCAGATGAGCACCGTGCAGGCCAACACCG 159628 33 97.0 33 ................................C TACTGGTATGACCTCCTCGTCGAAGACCACCGA 159694 33 97.0 33 ................................T CTACTCCCCAATCGGTCGAGAGGTACAGGCGTC 159760 33 97.0 33 ................................C AGTATTGGACCGCGTATAGTGATAGCCATCAAC 159826 33 97.0 34 ................................G GCCACTCGCAATGCGTTGCACAGTCGGTCGAACG 159893 33 97.0 32 ................................G CGGACGACCCGGCCGGCTGGCGGCGCGCGTTC 159958 33 97.0 33 ................................C TTGACGGGCACAGCGAGGGCGGCAGCCAGACCG 160024 33 97.0 33 ................................G TTGCTGGTCATGGGTTACTCTTCCTTCTTGCTG 160090 33 97.0 33 ................................T GGAATACCGACGTGATACTTACCGGCCCCACCA 160156 33 97.0 33 ................................C GATAGTGTGATGGCACCTGAGAAGGGTGTGTTG 160222 33 100.0 31 ................................. CGCCACGAAGCCCTCGGCTGCTGGACGAGTG 160286 33 97.0 34 ................................T GATGAAGGCCACAACAATCTTGGAAAGCCATGAC 160353 33 97.0 32 ................................T CAAAGTTCGCGGCCGATTCACTCAAGGTAATT 160418 33 100.0 32 ................................. GCAAGGTCGCGTCCGTCGTCACGTCCAGCCTT 160483 33 97.0 35 ................................T TCCCGCGAATGGGAGAAACGCGCCAAGGACAACAA 160551 33 97.0 34 ................................T GCTCGGTGGTCACATATCCCTTGATGTTGCTGGA 160618 33 97.0 32 ................................C GACACGAACACCCGTTACAGCGCCTACCAGAC 160683 33 97.0 33 ................................T GGCTGAAATTGAGAGGCCTGGACGGCACCGTGA 160749 33 100.0 33 ................................. AGACACCCACGGGAATCGTAAAGTCCCAAGCAC 160815 33 97.0 34 ................................G CCACGATGCTACCCACGCTCAGCATTAACTCCAG 160882 33 97.0 33 ................................T CTGGCACACAAGACTGTAATGGGTTGAGTGGCG 160948 33 100.0 33 ................................. CGACCGTGAACCGTGTGGAGAACCGGCCGCAGA 161014 33 97.0 34 ................................T TGCCGGACACGCCGAACAGCGTGGCGGTGATATC 161081 33 97.0 31 ................................C CCTGCCCGGTACATGGTGCCGTGACATTGAG 161145 33 100.0 35 ................................. TCTGTGGCGGCGTGGCCACGGTTTTGGGCCTGATG 161213 33 100.0 34 ................................. ACAAGAAGGTCATAGAACTGAACCAGAACGGTTT 161280 33 100.0 32 ................................. AGGCGGGCGACGCCATCAACAGCCCTTGCGTG 161345 33 97.0 31 ................................C ACGACACCTACGACAACGTGTTTCCCTACGT 161409 33 97.0 34 ................................T GATGAAGGCTACAACGATCTTGGAAAGCCATGAC 161476 33 97.0 34 ................................G ACCAGGACGTGACCCGTGCCATCACCCGCGTCAA 161543 33 97.0 32 ................................G CCGTCGTCGGCAAGATCGACGGCCAGGGCATC 161608 33 100.0 34 ................................. AGGACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 161675 33 97.0 32 ................................T TCATGCGCTGCAGTGCCTGGCGTGACATGGCC 161740 33 97.0 32 ................................C ACGACGACTGCGACTGCCAGATCGTGCCCGAA 161805 33 100.0 32 ................................. CCATCGTCTTGCAAATGAACACGGCGCGTGAA 161870 33 97.0 33 ................................T GGAACGGCCAATTGTGGGGCATCAGCAACGCGG 161936 33 97.0 32 ................................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 162001 33 97.0 35 ................................T CGGACTGCATGTTCAACAACCTGAGCTTCCGCCCG 162069 33 100.0 34 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCCTC 162136 33 97.0 32 ................................C ACTGCGAAGGAGTATTCAAATGAGCAAGACCG 162201 33 100.0 32 ................................. TCACCACCGAACCATGCCAATACTGCGGCAAC 162266 33 97.0 34 ................................T GGCTCAGTTGGTAACTCAGATGGACAACGTAGAC 162333 33 97.0 33 ................................C CCGGCCTTGCTCGCACTATCCGCTGCGGCTTGA 162399 33 97.0 34 ................................T CGATGTTTGACCCGCGCGTGGTCGGAGAGGCAAG 162466 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================== ================== 122 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTCTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCGTATTATGGAATGCTATGCCCATTCTCGCG # Right flank : TCTTGAACAACTAAAAAAGAAAGAATCGCCCGGGTCGCACCCCACTGGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //