Array 1 34-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAR01000027.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 96.6 32 ............................C AACATTGGAAAATGGCAAGCTATTCCAGGACT 95 29 100.0 32 ............................. TTTCAATCCGTTCTTTAATTGGGAGAGCGGCT 156 29 100.0 32 ............................. AAATTATGAGTGAAAAAGTGAAGGTGCCACAG 217 29 100.0 32 ............................. TGTACGACGGTTCAGAAGTGCGCTTGTACAAT 278 29 79.3 0 .............C.........C.AAAA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TCAAAGGATGGGTTAAAATGTTAAAAAAGAATTG # Right flank : ACAACATCCCGATCAAGTGTAACCAATCCCCATCCCGCAATTTTCTTCCCATCTCACATTCTTATCCCTGTTCAAATTCCCCGCCGTGAACTAAAATAAAATTAAATTAACGTTATCCATTACAAACCACGCAACGCGGTGACCACTCCCGCTCATCAGTCGAGGTGACGCACATGACCCAGCGATTTGTCCAAACTGAACTTTTAGGTGACTGGCTTCTTCAAACTGACATTCGCCAATCGTTTTTAAAACCGTAGCGAAGGCCGGCAAAGAAGTGGCGGCTCTGTGCCGTCGGGAAATATCGCAGATCATCTACGACCTTCGCGGAAAGTTCATTCTCACTGACATTTTAAAGGCCCTTCGATTTCCGAAGGCAACCTATATGTATTGGCAGAAACGGTTTCACCGGCCTGACGCTGATAAAGCCCTTGAGGACCGGATTCTTGCCGTTCATCGTCAGAATCCGGACTATGGCTACCGGCGGGTGACGATTGCCCTGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3672-4613 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAR01000088.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3672 29 96.6 32 ............................T ACTATCAATGCTTCTAAGGTACTTACTAGTAA 3733 29 100.0 32 ............................. TACCGGAATGTCTGTCCTTGTCAAATGCTCAA 3794 29 100.0 32 ............................. AGCCTATTCGCAGGATTTGTACACAACGTTTA 3855 29 96.6 32 ............................T AGGCTAGTTTATGAATATTTTTAATGCAAATT 3916 29 100.0 32 ............................. TGAAACATTGTCCCAAAGGTCTGATATGGATA 3977 29 96.6 32 ............................T CAGATGCGGTTTTAAATGACATCTCCAATTTA 4038 29 100.0 32 ............................. AGTACCTTTACCATATTGATCAACGAGTGTCT 4099 29 100.0 32 ............................. TGCTTTAGCGGTACCTTTAAGTGACTTGTTAG 4160 29 96.6 32 ............................T AATTCTTTTTGGGGTAAGGTTTTGGATGTTTT 4221 29 100.0 32 ............................. GGATCCAAACAGCGAAACCGAACTTTTGAGAT 4282 29 93.1 32 ...........A................T ATCAATAACGCGTTTTGAGGCTTTATTCTTGG 4343 29 96.6 31 ...........A................. TGCCATGCGTTCGCATTCGCCACGCCGGTTG 4403 29 100.0 32 ............................. TTGGTACCTTTCGGGAAACTGTCAACTTTCTG 4464 29 89.7 32 ......T...........A.........G TATGTACGCACACAAATCGACAAACTCTTTGA 4525 27 82.8 32 ..GC........--..............T GCTTGCATGGGGCCCGGCTTCCCTGGGCCTCT T [4547] 4585 29 82.8 0 ..G.........G..........A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : TCGTCACAATTTGACAACCCGTTACCTGCTAAGTAACGGTGACTACATCACCGGAAATCGTAAATTGGTGAAGATGGGCCGCCACCAGCAGCCAAAACGGTTGGTTGTGAAGAAGACGATTAATCGTTATGGGGATGCAAACTTTACCAAGCGCAACGGCCACTTCAAGAAGGGCACCAAGCTGACCATTAAGAAGGTCACGTTCAGCCACGAATTTTCAAGAACGCGGACTGGGGTTCAGCGGTATGTTGTGAATGGTGGCTATGTAACGGCTAGCCCGAAATTTGTGACAGTTCAGTATTAAATTTTGATTTGAGAACCTGGGGGACCGGGTTCTTTTTTGTTCGATGAAATGTGTGCGAATCTGATTTGGATTTTGTGGATTAGGCGAGATTTGTTTGCTATGATTAGGTTGGTTGCCAAATGGAGTTCGAATGCAAGTTAGGGTAATTTAGCTAATTCGTAATTTCACAATGCCGGTATGACGGGATTTGTTTAGA # Right flank : TCAAATTATTGATTACGCAGCCAAATTGGACAGAAAGATTGAAAACATCATCGCCTCCATTTGATCTTTTCCCGGACTAAAAAATTGCACAGATTGGAGCAAGTTATTTGAACGCTGTCACCAAAATCAAAATAGCCATATGGTTGTCACGCTTGGCATACATCCTGTTCTTCTTCTGGCTAATTGTTGATTTCTTTGTACTAGACCGCAACGCCGGACTACCCGGATTACTATTCCTTTTAATCGGTTTTCCCTTAGTTTACTTAGAAAATCAATTAGAAAAATTAGATCCGAAGTACCGGAAATCGCTAGCAGGCACGGTCTGGCGATACCTTTTACTTCCGTGGTTTATTGTGATGTAGCATTTTTCGCACTCACTTTAGACGCATACTATCACTAATCTTTGTCGGCACGGGCGACGTCACGCTTGGTTACATTATTTATCGTATTTTTCTTAACCGAGACGCTTTTATAGTGCCGACGCTGGGAAAGGGTATTGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4466-6145 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAR01000049.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4466 29 96.6 32 ............................C GTGGTAGCTTTTTCAAGCTCTTCAAGATCATC 4527 29 96.6 33 ............................C GTTTGCAGGAGATACGAACACATGGGAAAGTTG 4589 29 96.6 32 ............................C AAGCCGGCTACACAAATTGGTGACCCCGACAA 4650 29 100.0 32 ............................. GACGCTAGTTGCTTACCTGTTGTGGGTATTGG 4711 29 96.6 32 ............................C AGTTTGGCTATAAAACTAAAGCTGGTAATTCA 4772 29 100.0 32 ............................. CACGCCAAAATCATGGAGAAAGTTTTCAATAG 4833 29 96.6 33 ............................C TATTGCCTAACACAATACTAGATCCATTAGTTG 4895 29 100.0 32 ............................. AAGCATTCACAGCCGCCGTAACGTGCAACTTT 4956 29 96.6 32 ............................C GAAACTGATGGGATCTCATACACCACAGACCT 5017 29 100.0 32 ............................. CAAATCGATGCGCTCAGGCTTTACAGAACGTC 5078 29 100.0 32 ............................. CAATATCAATGGTGATATCTCTGACGAAAAGA 5139 29 96.6 32 ............................C TAAGGCTAAGAAAAAGGAGTTGCGGAGATGGA 5200 29 96.6 32 ............................C AGGGAAAACTCTTAGGAAACTTGCCCAAGCTC 5261 29 100.0 32 ............................. TATGAACAACTTTTGAATCGTCAGCAGGTGTG 5322 29 100.0 32 ............................. AATACGGCGCCACTAGCTGAACCAGAGGTAAC 5383 29 100.0 32 ............................. AGCATTGGTATCAAATGCTGACAGCCGCAACG 5444 29 100.0 32 ............................. GCTACTAAGTTTTATCGTGTGGGTGTCCAGTA 5505 29 96.6 32 ............................C TTAATTTATCATATCGATGCCAAAAAATATTA 5566 29 100.0 32 ............................. AACGTGATGCGAGAAAAAGATAAGTTTGACCG 5627 29 100.0 32 ............................. TGATCGTTTCCAAAGACGAAAAATTAACCGCA 5688 29 100.0 32 ............................. GCCAAAGCGTGGCGCCGTTGCTTGTCATGTAA 5749 29 96.6 32 ...C......................... ACACACGTATGGTGACCAAAATACACACGTAT 5810 28 86.2 32 ...C...................-C...C CCACGAAAGGGCACGATGTTTAACGAGACGCC 5870 29 93.1 32 ...C........................C GACGTCATGGAAACTGAACAGTACAACGTCGT 5931 29 93.1 32 ...C...................A..... GAGTTAAGCAAGCACGGGATCGATTTCACAGT 5992 29 96.6 32 ..................A.......... CATGAACCGAGATTTTCCAGATAACCGTAAAG 6053 29 89.7 32 ...........AC...............G AACTACAAGTTGAGCTGGACGGACATCGCCAA 6114 29 89.7 0 ..A..T.....................T. | GA,T [6131,6137] ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.9 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GAAGGTATTAAGATCAACTATAACGATGGCTCTAGCAATGCGAAGCCGATTGCTGCTCATCATGCCGCAACCCATCACCGGCAATCAACGGCAAGTCGATCTCAGGGCGGCAGCGCAACGCAAGCCGCTCACTCGACAACTAAGCAGGGCAAGTGGACGGTGGCGGCGTCGGGGATGGTGTTTGTCTCCGATAGCAACAAGTTCTATACGGAAGTCACTACCCCTGGGAATTATCAGTATATGAGCAGGTCACAGGCAGCCGCGAGTGGGGCAACCCAAGCGGCGCGGGGGAACCAGTATGCCCGGCCGTGATAATTTGATTATTAAAATTGTCGTTGATGAAGCAGGCAATCTTCTTTGGGGAGGATTGCCTGCTTTGCAGTTGTGAAATTGGTATAATGAGGTTGATTTGATGGTGAGAGGTTTAGGAATGAATGCAAGTTAAAGAAATTTGGGCCATTTCTGAATTTGAAATCGCGGTATGACGGGATTTGTTTAGT # Right flank : TGTGACGATAGATTTGTCAGATCAAACTATTAAAGAGCTGGCGGATCGGATGACCACCAAAGGATTTGGCTTTTTGAAACCTGAATCTGAGAATCAGTCTTGAAATATTAAGGACTAATTGAAAAAACTATTGGTTACTGGAAAGTTATTGAGATGTTGAGTTGCCCTGGCTACAGGATGACACCTCGTTATTAATTAACTCGGCCATAATGTTGATAAAAAAACTATACGTCGTTGTAAACGCAGCGCAATTTGTGAGATATTAGTAGTGTAATTTGAGGTTGATGAAATCAACGGCATGTCCAATGATGTCCAAAATGCGCTCCCATTATCCTTTTATTCTCATGGAATTGTAGTATAGAAAAAAATTTAATATTTTTCCTCTCTTAAAATGATAGCGGCTTTGAACTTCGACTTCGTGTATCCGTTTTGTTAGAAAAAAGCACTTACTTTCTAGGATACATAAAAACCTCAATCAATTGACTGGGGTTTGTGTTGGA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9593-10414 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAR01000049.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9593 29 96.6 32 ............................C AAAATCTTCTCGTGACAATTTATTGTCAATGT 9654 29 100.0 32 ............................. GAAAAAGGATATTAAAAATGAAGACTTAATCC 9715 29 100.0 32 ............................. CCAGTAGTCAATCAACTCCTTAAAGCCTCAAA 9776 29 100.0 32 ............................. CCAGTCACGTTTGAAGATATTTCCACCTTCAA 9837 29 100.0 32 ............................. AATCTTAATTTTGTCGATTTAAAAGAAGCATT 9898 29 96.6 32 ............................C GTCATGATAGCTAGAATTATTGCTTAAAACAG 9959 29 100.0 32 ............................. ATATATATGCAAGGGAAAGGACAAAATTTTTC 10020 29 100.0 32 ............................. GTTGGCATCCTGTTCAATCGAACCAGTTTCGC 10081 29 100.0 32 ............................. CATGTTCCAAAGAGTGAGGCGCATTTGAAGAA 10142 29 100.0 32 ............................. CGTCAAGGTTTTCAGTGGTCTTGCCAGCCTTA 10203 29 96.6 32 ............................C TGACCGCTTGCGCTTCTTCCAGGAGGTTCTGT 10264 29 100.0 32 ............................. GATTGCTGCTGTAATTCATCCATTTGTTTCTG 10325 28 96.6 32 .....-....................... ATTGGATAGCAACTGAAAAAGGAAGTGATTCC 10385 29 79.3 0 ....................AAAT..TG. | T [10403] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TGTTTAATAGAAACATTTTGTGCCATAGTGAGTTTGCTTCCTTTCTAGAAACTGGCGCGATCATCCGTGAAGGATAACGGCGACAGAAAACAGACATTAAATTGAACGACCAACTTCTATCCAAAAGTAATGGGGAAGGTAAACACTTACATAAACGCGATTTTGGTTTTGCCAAATTAAATTATCCACCATACTTTTGGTAACGCTTACATTTTATTCGGTTTTGGAAAATACACAAGTAATTAGACTTGGGATTGAGGGAGCTGAATTGTATTGCTGGTAGATGAGATTGACTAGTGTGTGAGCAGCAATAGCCATTTTGACCGCGGAAGTTTTTATGTAAGGGAGTCGTTTTGAGGTGAGAATTGTCCATTTTGCAGTGGTGAAATTGGTATAATGAGATTGATTAGATCGTGAACGGCGTTTTTGTCTGAATACAAGTTAATGAAATTTTGGTTATTTCTGAATTTGGAATCGCGGTATGACGGGATTGGTTTAGT # Right flank : TCGGATGCCTGGATCATGAGGAATATTGTTATGGATGCAGATGAATTGATAAGGGTGAAACAAATTACAAAGCAGGCTTCACCCTTTAAAGAAAAGGACAGTGTCCCTGTTTGGGAATAGGAGGACGAGATGGATCTTCGGGAGAAAATAAAAGCAATTTTAGATAGTGATATTAGCGCTTATCGAATCGCTAAAGAAACAGGGGTTCCGCAGCCAAATATCTCGAATCTTCGCAATGGGAAACGTGAGATCGGTAATTTAACGTTAGATATTGCAGAAAAATTAGGTAAGTATTACGATTCTTTAAAATAAATTGTATTTTTGCTTGCATATCTATATCATATGATATACATTCTAATTGTAGTATTCCCACGCATGTCAGGGTCTTAATGTACAATATTCAAATTACTTTAATAAATAGTTGAAAATTTAGTCACATATCTTTGAATCTGTTCTACTGGATTGCAATTAAGAAGATATGTAGATACCACATGTATATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 21366-23164 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAR01000049.1 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21366 29 96.6 32 ............................C AAACCGGCTACACAAATTGGCGACCCAGACAA 21427 29 100.0 32 ............................. TGCACCAGCTAAACCTAAAGTATTAACCAATT 21488 29 100.0 32 ............................. ACTAACTATATCAAACAAGCAGAGTGGACTAA 21549 29 100.0 32 ............................. TATATACCTAATTATTCAAAAGTCCTATAACA 21610 29 96.6 33 ............................C TAGAACTGAATCACCGAAGCAAATTAAAGAGGA 21672 29 100.0 32 ............................. AAGACTTTTTAAAGCATAGAGGCTTTGTGTTA 21733 29 100.0 32 ............................. CAAATTATACTGGTACACTTTTACTGGTTATG 21794 29 96.6 32 ............................C TTGGCCGGCGACAAAGTCATCATTTTCTTTGC 21855 29 100.0 32 ............................. GATTATACAAGTTTAAATAGTGATATCAGTTC 21916 29 96.6 32 ............................C CAAACCCAGACACTGAATTGGCTGAAAGCCAA 21977 29 100.0 32 ............................. AATTTATTCTTTCTGTAATCGTGAACTACTCG 22038 29 100.0 32 ............................. GGACCGGGCATTGGCAACGAGCGATGAAATTA 22099 28 93.1 33 .....................-......A TAAATACCCCTGATAAGATTTCCCCTCATCCCA 22160 29 100.0 32 ............................. CAATAATTGCTTCTAAAGACTGTCCAACAGTA 22221 29 96.6 33 ............................C GATAACTGAACCGCCTTTTTGCAAACGGGGATA 22283 29 100.0 31 ............................. ATGGCCGTTATCAGGCTGGTGGTACTGATGA 22343 29 96.6 32 ............................C ATCTTCATCCGCAAGACAGACGCTCTGGTTAA 22404 29 96.6 32 ............................C TTTGCGTGTCAAAGGATCAATCTGTAAAACAG 22465 29 100.0 31 ............................. AAGCTTTTTCCAGCCTTTAAATCAGCAGTTG 22525 29 96.6 32 ............................C TGTGGGGAAACTTTACGTTTTCGGAAAATTGG 22586 29 100.0 32 ............................. GCTAAATGGGTAGAGAAGCAAGCTGCTCTATG 22647 29 96.6 32 ............................C AATCCAACTAACGAACCTTTTACAACCACTTT 22708 29 100.0 33 ............................. ATACGAGGGAGACGTTTTAGAATATTGTTATGA 22770 29 100.0 32 ............................. AATGCCTGCCATAAAGTTTTGTGAATCGGACT 22831 29 100.0 32 ............................. TAACACTTTTGGACAACCACAGTCATATCATG 22892 29 100.0 32 ............................. TATACGCCACTGCTGATTTATTTATGCGACAA 22953 29 96.6 32 ............................C GTGGAATCCAGCCTTGGGATTGTTTACATCCG 23014 29 96.6 32 ............................C GGGCAATGAAATTGACTTATGTACCAATGGTG 23075 29 96.6 32 ............................C TCGTTAAACAACTTTGTGAAGCAAAAATATCG 23136 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.4 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCTAAAAATCAGATTATTGCCATCGGTGCCGTTAAGCGACAAAAGAATGGTGAAGATGTTTCATTTCATAAATTAATTCGAATTGATGGCCAAGTTCGCAAGAAGATTACTGAGTTAACCGGAATCACATCTGAACGGTTAAGTGCAGAAGGCGTTGAGCTGGTCTCCGCGCTCCAAAAGCTGGAAGCCTTCGTTAAGGATGCGGTGATTGTTGGGTATAACCTCCGATTTGATGAGGCCTTCTTATCCTATAATATTCAAAATAACGGACTTCCGGAGCTGACTAACCAGATGATTGATTTGATGCCGGTTGTTAAGAAAGCTAATCAGTTTCTGGAAAATTATCGATTAGCAACTGTGCTGAAAGATTACGATATTGAGAATTTAACACCCCATCACGCATTAGCGGATGCGGAAGCGACTTTGTTACTGGCGATGAAGTTAATGAAAAATGGCAGTTTTCACATTTAAGAATGCTGTTATATCGGCTTTTGTTTAGT # Right flank : ATACGAGGGAGACGTTTTAGAATATTGTTAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //