Array 1 2002026-2002663 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMJ01000020.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01256 2014LSAL01256_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2002026 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2002087 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2002148 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2002209 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2002270 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2002331 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2002392 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2002453 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2002514 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2002575 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2002636 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2019304-2020920 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMJ01000020.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01256 2014LSAL01256_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2019304 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2019365 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2019427 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2019488 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2019549 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2019610 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2019671 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2019732 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2019793 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2019854 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2019915 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2019976 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2020037 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2020098 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2020159 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2020220 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2020281 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2020342 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2020403 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2020464 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2020525 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2020586 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2020647 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2020708 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2020769 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2020830 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2020891 29 93.1 0 A...........T................ | A [2020917] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //